miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31012 3' -64.4 NC_006560.1 + 118905 1.11 0.000408
Target:  5'- uGCGCCAUCCGCGCGGCCCUCCAGGGGg -3'
miRNA:   3'- -CGCGGUAGGCGCGCCGGGAGGUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 99643 0.84 0.036623
Target:  5'- gGCGCCGaCCaGCGCGGCgaucugcgCCUCCAGGGGa -3'
miRNA:   3'- -CGCGGUaGG-CGCGCCG--------GGAGGUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 72339 0.84 0.040261
Target:  5'- cGCGCC-UCCgucgggggugugggGCGCGGCCCUCgCGGGGGc -3'
miRNA:   3'- -CGCGGuAGG--------------CGCGCCGGGAG-GUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 15446 0.82 0.053697
Target:  5'- gGCGCgCGUUCGCGCcGCCCgggCCAGGGGc -3'
miRNA:   3'- -CGCG-GUAGGCGCGcCGGGa--GGUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 66921 0.81 0.057942
Target:  5'- cCGCCGUCCGcCGCGGCCCccgccCCGGGGcGg -3'
miRNA:   3'- cGCGGUAGGC-GCGCCGGGa----GGUCCC-C- -5'
31012 3' -64.4 NC_006560.1 + 35277 0.8 0.074566
Target:  5'- cGCGCCGggCgGCGgGGCCCggggUCCGGGGGc -3'
miRNA:   3'- -CGCGGUa-GgCGCgCCGGG----AGGUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 58400 0.79 0.082425
Target:  5'- gGCGCCcccgggggCCGCGuCGGUgCUCCGGGGGu -3'
miRNA:   3'- -CGCGGua------GGCGC-GCCGgGAGGUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 140362 0.77 0.114048
Target:  5'- gGCGUCGgcgCgGCGCGGCCCgagguccggucguccCCGGGGGg -3'
miRNA:   3'- -CGCGGUa--GgCGCGCCGGGa--------------GGUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 1477 0.77 0.128566
Target:  5'- cGCGCCccAUCggaggCGCGCGGCCCacgCCGGcGGGa -3'
miRNA:   3'- -CGCGG--UAG-----GCGCGCCGGGa--GGUC-CCC- -5'
31012 3' -64.4 NC_006560.1 + 31549 0.76 0.131732
Target:  5'- gGCGCCAUCgGggccuaCGUGGUCCUCguGGGGc -3'
miRNA:   3'- -CGCGGUAGgC------GCGCCGGGAGguCCCC- -5'
31012 3' -64.4 NC_006560.1 + 141597 0.76 0.13497
Target:  5'- gGCcCCGgugcCCGcCGCGGCCCcgCCGGGGGa -3'
miRNA:   3'- -CGcGGUa---GGC-GCGCCGGGa-GGUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 142702 0.76 0.13497
Target:  5'- gGCGCCcggCCGgcCGCGGCCCcgaggcgcCCGGGGGg -3'
miRNA:   3'- -CGCGGua-GGC--GCGCCGGGa-------GGUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 12195 0.76 0.148664
Target:  5'- gGCGCCGUCCGCcccgacgGGCCCcgcggCCAGGaGGg -3'
miRNA:   3'- -CGCGGUAGGCGcg-----CCGGGa----GGUCC-CC- -5'
31012 3' -64.4 NC_006560.1 + 28746 0.75 0.15228
Target:  5'- cGCGCCA-CCGCGUcccGCCCcgUCGGGGGa -3'
miRNA:   3'- -CGCGGUaGGCGCGc--CGGGa-GGUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 32530 0.75 0.155603
Target:  5'- gGCGCCccCCagggaggcggggaGUGCGGCCCcccCCAGGGGg -3'
miRNA:   3'- -CGCGGuaGG-------------CGCGCCGGGa--GGUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 50257 0.75 0.155603
Target:  5'- cGCGCC-UCCGgGCGGCcgggcucggcgcgCCcCCGGGGGu -3'
miRNA:   3'- -CGCGGuAGGCgCGCCG-------------GGaGGUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 125865 0.75 0.163612
Target:  5'- cGCGCC--CCGCG-GGCCCcccgUCUAGGGGc -3'
miRNA:   3'- -CGCGGuaGGCGCgCCGGG----AGGUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 149143 0.75 0.163612
Target:  5'- cCGCCGcggcgCgGgGCGGCCC-CCAGGGGc -3'
miRNA:   3'- cGCGGUa----GgCgCGCCGGGaGGUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 117740 0.75 0.167554
Target:  5'- -gGCCuccucCCGCGCGaGCCCagcCCGGGGGg -3'
miRNA:   3'- cgCGGua---GGCGCGC-CGGGa--GGUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 102426 0.74 0.188126
Target:  5'- cGCGgCGUCCGCcuccucggccgccGCGGCCgccguCUCCAGGGc -3'
miRNA:   3'- -CGCgGUAGGCG-------------CGCCGG-----GAGGUCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.