miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31012 3' -64.4 NC_006560.1 + 188 0.66 0.565466
Target:  5'- cCGCCGgcguuuuuuUCCGCGCGcGCgCCgCCGcGGGa -3'
miRNA:   3'- cGCGGU---------AGGCGCGC-CG-GGaGGUcCCC- -5'
31012 3' -64.4 NC_006560.1 + 898 0.72 0.268272
Target:  5'- cCGCCGgggCCGC-CGGCCgCUCCcggcgguggaggccuAGGGGa -3'
miRNA:   3'- cGCGGUa--GGCGcGCCGG-GAGG---------------UCCCC- -5'
31012 3' -64.4 NC_006560.1 + 1011 0.67 0.489761
Target:  5'- gGCGCCGUCUcCGCcccgccgucuccGCCCUCCcGGGu -3'
miRNA:   3'- -CGCGGUAGGcGCGc-----------CGGGAGGuCCCc -5'
31012 3' -64.4 NC_006560.1 + 1128 0.68 0.439171
Target:  5'- cGCGCCccccUCCgGCcCGG-CCUCCGGGGu -3'
miRNA:   3'- -CGCGGu---AGG-CGcGCCgGGAGGUCCCc -5'
31012 3' -64.4 NC_006560.1 + 1477 0.77 0.128566
Target:  5'- cGCGCCccAUCggaggCGCGCGGCCCacgCCGGcGGGa -3'
miRNA:   3'- -CGCGG--UAG-----GCGCGCCGGGa--GGUC-CCC- -5'
31012 3' -64.4 NC_006560.1 + 1935 0.68 0.462363
Target:  5'- uCGCCGUCCGgGUcccaguccggggucGcGCCCcCCAGGGcGg -3'
miRNA:   3'- cGCGGUAGGCgCG--------------C-CGGGaGGUCCC-C- -5'
31012 3' -64.4 NC_006560.1 + 2061 0.7 0.323593
Target:  5'- aGCGCa---CGCGCGGCgCggcggcggggUCCGGGGGc -3'
miRNA:   3'- -CGCGguagGCGCGCCGgG----------AGGUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 2199 0.73 0.207016
Target:  5'- cGCGCgCggCCGCGCGGUCCagcgCCAGGu- -3'
miRNA:   3'- -CGCG-GuaGGCGCGCCGGGa---GGUCCcc -5'
31012 3' -64.4 NC_006560.1 + 2903 0.7 0.344795
Target:  5'- cCGCCG--CGCGCGGCggUCCAGGcGGg -3'
miRNA:   3'- cGCGGUagGCGCGCCGggAGGUCC-CC- -5'
31012 3' -64.4 NC_006560.1 + 3125 0.66 0.57494
Target:  5'- cGCGCgggucgaaCAUgaGCGCGGCgCgCCAGGGc -3'
miRNA:   3'- -CGCG--------GUAggCGCGCCGgGaGGUCCCc -5'
31012 3' -64.4 NC_006560.1 + 3269 0.74 0.19304
Target:  5'- gGCGCCAgccgCCGCGggggucgGGCCCgCCGGGcGGg -3'
miRNA:   3'- -CGCGGUa---GGCGCg------CCGGGaGGUCC-CC- -5'
31012 3' -64.4 NC_006560.1 + 3483 0.67 0.509657
Target:  5'- gGCGgCGUCgGCGuCGGCgucggcggcguCCagCAGGGGg -3'
miRNA:   3'- -CGCgGUAGgCGC-GCCG-----------GGagGUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 3906 0.66 0.57494
Target:  5'- gGCGgCGUCgGCGUccCCCUCCuccgccgcGGGGGc -3'
miRNA:   3'- -CGCgGUAGgCGCGccGGGAGG--------UCCCC- -5'
31012 3' -64.4 NC_006560.1 + 3942 0.66 0.573991
Target:  5'- gGCGCCgcgGUCgGCggcgaggGCGGCCg-CCAGGcGGc -3'
miRNA:   3'- -CGCGG---UAGgCG-------CGCCGGgaGGUCC-CC- -5'
31012 3' -64.4 NC_006560.1 + 4055 0.72 0.248602
Target:  5'- gGCGCCggCCGCgGCGGCgUUCucgcgcgccagCAGGGGc -3'
miRNA:   3'- -CGCGGuaGGCG-CGCCGgGAG-----------GUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 4591 0.67 0.503288
Target:  5'- -aGCCGUCgcgguagCGCGCGuagaaggcGCCCgaggccucgucggcgUCCAGGGGc -3'
miRNA:   3'- cgCGGUAG-------GCGCGC--------CGGG---------------AGGUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 4978 0.68 0.430751
Target:  5'- aCGCC-UCCGaGCcgGGUCCgagCCGGGGGc -3'
miRNA:   3'- cGCGGuAGGCgCG--CCGGGa--GGUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 5308 0.67 0.50057
Target:  5'- -gGCCG-CCGCgugcgacggcgGCGGcCCCUCCGGGu- -3'
miRNA:   3'- cgCGGUaGGCG-----------CGCC-GGGAGGUCCcc -5'
31012 3' -64.4 NC_006560.1 + 5771 0.66 0.556033
Target:  5'- gGCGCCG--CGCGCaGGCgCggaagCAGGGGg -3'
miRNA:   3'- -CGCGGUagGCGCG-CCGgGag---GUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 6449 0.67 0.518812
Target:  5'- cCGCCG-CCGC-CGGCCCUCCu---- -3'
miRNA:   3'- cGCGGUaGGCGcGCCGGGAGGucccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.