Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31013 | 3' | -54.3 | NC_006560.1 | + | 45043 | 0.72 | 0.704372 |
Target: 5'- cGUCUCUgucguGUGUCGUUcgUCcUCCCGuCCCCc -3' miRNA: 3'- -CGGAGG-----CACAGCAA--AGaAGGGU-GGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 50259 | 0.67 | 0.924151 |
Target: 5'- cGCCUCCGggcgGcCGggcUCggCgCGCCCCc -3' miRNA: 3'- -CGGAGGCa---CaGCaa-AGaaGgGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 53458 | 0.67 | 0.948341 |
Target: 5'- cGCCUCC-UGUCGg--Cg--CCGCCCg -3' miRNA: 3'- -CGGAGGcACAGCaaaGaagGGUGGGg -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 53525 | 0.69 | 0.880383 |
Target: 5'- cGCCgcgCCGUccCGUccgggCCCGCCCCg -3' miRNA: 3'- -CGGa--GGCAcaGCAaagaaGGGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 71304 | 0.66 | 0.956001 |
Target: 5'- cGCgUCCGUgguccgcGUCGUgUCgcgCCCGCUCg -3' miRNA: 3'- -CGgAGGCA-------CAGCAaAGaa-GGGUGGGg -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 86847 | 0.7 | 0.817409 |
Target: 5'- cGCCgcgCCGUcggcGUCGUccccgUCcucCCCGCCCCc -3' miRNA: 3'- -CGGa--GGCA----CAGCAa----AGaa-GGGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 89385 | 0.7 | 0.834306 |
Target: 5'- aUCUCCG-GUCcg--CUcCCCGCCCCg -3' miRNA: 3'- cGGAGGCaCAGcaaaGAaGGGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 93162 | 0.68 | 0.900532 |
Target: 5'- cGCCg-CGUGUCGcg---UCCC-CCCCa -3' miRNA: 3'- -CGGagGCACAGCaaagaAGGGuGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 93368 | 0.67 | 0.940779 |
Target: 5'- cGCCUcCCGUGcCGUcgggggggggggCUUuccccaccacacacCCCACCCCc -3' miRNA: 3'- -CGGA-GGCACaGCAaa----------GAA--------------GGGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 95717 | 0.73 | 0.698359 |
Target: 5'- cGCCUCCGUGUaccggugcggggaaGUggagCUgCgCCGCCCCg -3' miRNA: 3'- -CGGAGGCACAg-------------CAaa--GAaG-GGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 101452 | 0.68 | 0.912813 |
Target: 5'- cGCCUCCaG-GUUGUUg--UCgCCGCUCCg -3' miRNA: 3'- -CGGAGG-CaCAGCAAagaAG-GGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 104211 | 0.67 | 0.939374 |
Target: 5'- uGCCggCCGUgcuGUCGUUcgCggCCCugcuGCCCCc -3' miRNA: 3'- -CGGa-GGCA---CAGCAAa-GaaGGG----UGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 109788 | 0.76 | 0.529438 |
Target: 5'- gGCCUCgaagggcgaacgcgUGUGUCGggUCccaccCCCACCCCg -3' miRNA: 3'- -CGGAG--------------GCACAGCaaAGaa---GGGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 116004 | 1.13 | 0.002491 |
Target: 5'- cGCCUCCGUGUCGUUUCUUCCCACCCCc -3' miRNA: 3'- -CGGAGGCACAGCAAAGAAGGGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 120674 | 0.68 | 0.894042 |
Target: 5'- cGCCUCCccGUCcgcc---CCCACCCCg -3' miRNA: 3'- -CGGAGGcaCAGcaaagaaGGGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 124614 | 0.71 | 0.781672 |
Target: 5'- gGCC-CCGgggGcCGUg-CUUCUCGCCCCg -3' miRNA: 3'- -CGGaGGCa--CaGCAaaGAAGGGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 132405 | 0.74 | 0.613968 |
Target: 5'- aGUCUCCGUuUCGUccgUCgcggccgucgaucucUCCCACCCCu -3' miRNA: 3'- -CGGAGGCAcAGCAa--AGa--------------AGGGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 145116 | 0.7 | 0.817409 |
Target: 5'- cGCCccCCGUGUCccugcggggGgcUCUggccCCCGCCCCc -3' miRNA: 3'- -CGGa-GGCACAG---------CaaAGAa---GGGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 147977 | 0.68 | 0.897963 |
Target: 5'- gGCgUCCGUGUCGgcgUCggaggcggggcggUCgCgGCCCCc -3' miRNA: 3'- -CGgAGGCACAGCaa-AGa------------AG-GgUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 149276 | 0.69 | 0.887325 |
Target: 5'- cGCCUCCcccUCGg-----CCCGCCCCg -3' miRNA: 3'- -CGGAGGcacAGCaaagaaGGGUGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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