miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31013 3' -54.3 NC_006560.1 + 8418 0.7 0.817409
Target:  5'- cGCaC-CUGUGUuuUGUuuUUCUUCCCAUCCCc -3'
miRNA:   3'- -CG-GaGGCACA--GCA--AAGAAGGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 10263 0.67 0.929463
Target:  5'- gGCC-CCGgccUCGg--C-UCCCGCCCCc -3'
miRNA:   3'- -CGGaGGCac-AGCaaaGaAGGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 11268 0.67 0.934537
Target:  5'- -aCUCCGgggGUCGUUUCagcUCgUCGCCCa -3'
miRNA:   3'- cgGAGGCa--CAGCAAAGa--AG-GGUGGGg -5'
31013 3' -54.3 NC_006560.1 + 15128 0.7 0.834306
Target:  5'- gGUCUUCGUGgucgCGggcUCUgggcccCCCGCCCCc -3'
miRNA:   3'- -CGGAGGCACa---GCaa-AGAa-----GGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 15198 0.73 0.663969
Target:  5'- cCCUCCGgcgGggCGggacUCgUUCCCGCCCCg -3'
miRNA:   3'- cGGAGGCa--Ca-GCaa--AG-AAGGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 17526 0.69 0.85047
Target:  5'- cGCCgCCGUcGUCGUcg---UCCGCCCCc -3'
miRNA:   3'- -CGGaGGCA-CAGCAaagaaGGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 17585 0.71 0.772382
Target:  5'- uCgUCCGUGUCGUcc---UCCGCCCCg -3'
miRNA:   3'- cGgAGGCACAGCAaagaaGGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 18064 0.66 0.963525
Target:  5'- cCCgCCGUGUUucucggUCccCCCGCCCCu -3'
miRNA:   3'- cGGaGGCACAGcaa---AGaaGGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 18437 0.69 0.865096
Target:  5'- cGCCgcggCCGg--CGgagUCUUCCCcgaggacGCCCCg -3'
miRNA:   3'- -CGGa---GGCacaGCaa-AGAAGGG-------UGGGG- -5'
31013 3' -54.3 NC_006560.1 + 22189 0.68 0.912813
Target:  5'- cGCCgucggggCCGccGUCGccgCggCCCGCCCCc -3'
miRNA:   3'- -CGGa------GGCa-CAGCaaaGaaGGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 24843 0.67 0.929463
Target:  5'- cGCCUCCGgccgCGUcUUCgggCCCgGCCUCu -3'
miRNA:   3'- -CGGAGGCaca-GCA-AAGaa-GGG-UGGGG- -5'
31013 3' -54.3 NC_006560.1 + 27427 0.69 0.85047
Target:  5'- gGCCUCCGg--CGUUUCgcgUCCgCGuccUCCCg -3'
miRNA:   3'- -CGGAGGCacaGCAAAGa--AGG-GU---GGGG- -5'
31013 3' -54.3 NC_006560.1 + 27551 0.71 0.762968
Target:  5'- gGCCuUCCGUGUCGcg-CgcgCCCGCCg- -3'
miRNA:   3'- -CGG-AGGCACAGCaaaGaa-GGGUGGgg -5'
31013 3' -54.3 NC_006560.1 + 27953 0.71 0.762968
Target:  5'- cGCC-CCGgggGUCGguggUCgUUCCCGCCUg -3'
miRNA:   3'- -CGGaGGCa--CAGCaa--AG-AAGGGUGGGg -5'
31013 3' -54.3 NC_006560.1 + 28732 0.72 0.737971
Target:  5'- cGCCgCCGguugGUCGcgccaccgcgUCCCGCCCCg -3'
miRNA:   3'- -CGGaGGCa---CAGCaaaga-----AGGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 30129 0.67 0.934537
Target:  5'- gGCCgcaCCGUGcgCGcccUCUcCCCGCCCg -3'
miRNA:   3'- -CGGa--GGCACa-GCaa-AGAaGGGUGGGg -5'
31013 3' -54.3 NC_006560.1 + 30589 0.67 0.948341
Target:  5'- cGCCgcggcCCGcGUCGcgcg--CCCGCCCCc -3'
miRNA:   3'- -CGGa----GGCaCAGCaaagaaGGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 34007 0.66 0.966772
Target:  5'- cGCCUCCG----------UCCCGCCCCc -3'
miRNA:   3'- -CGGAGGCacagcaaagaAGGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 42145 0.69 0.865845
Target:  5'- gGCgUCCGggucgccGUCGUcgUCccccgcgCCCACCCCc -3'
miRNA:   3'- -CGgAGGCa------CAGCAa-AGaa-----GGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 44412 0.72 0.734066
Target:  5'- cGUCUCCGcgaggcccugacUGUCGUcaacgcgCUgcugCCCGCCCCc -3'
miRNA:   3'- -CGGAGGC------------ACAGCAaa-----GAa---GGGUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.