Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31013 | 3' | -54.3 | NC_006560.1 | + | 116004 | 1.13 | 0.002491 |
Target: 5'- cGCCUCCGUGUCGUUUCUUCCCACCCCc -3' miRNA: 3'- -CGGAGGCACAGCAAAGAAGGGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 109788 | 0.76 | 0.529438 |
Target: 5'- gGCCUCgaagggcgaacgcgUGUGUCGggUCccaccCCCACCCCg -3' miRNA: 3'- -CGGAG--------------GCACAGCaaAGaa---GGGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 132405 | 0.74 | 0.613968 |
Target: 5'- aGUCUCCGUuUCGUccgUCgcggccgucgaucucUCCCACCCCu -3' miRNA: 3'- -CGGAGGCAcAGCAa--AGa--------------AGGGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 15198 | 0.73 | 0.663969 |
Target: 5'- cCCUCCGgcgGggCGggacUCgUUCCCGCCCCg -3' miRNA: 3'- cGGAGGCa--Ca-GCaa--AG-AAGGGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 95717 | 0.73 | 0.698359 |
Target: 5'- cGCCUCCGUGUaccggugcggggaaGUggagCUgCgCCGCCCCg -3' miRNA: 3'- -CGGAGGCACAg-------------CAaa--GAaG-GGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 45043 | 0.72 | 0.704372 |
Target: 5'- cGUCUCUgucguGUGUCGUUcgUCcUCCCGuCCCCc -3' miRNA: 3'- -CGGAGG-----CACAGCAA--AGaAGGGU-GGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 44412 | 0.72 | 0.734066 |
Target: 5'- cGUCUCCGcgaggcccugacUGUCGUcaacgcgCUgcugCCCGCCCCc -3' miRNA: 3'- -CGGAGGC------------ACAGCAaa-----GAa---GGGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 28732 | 0.72 | 0.737971 |
Target: 5'- cGCCgCCGguugGUCGcgccaccgcgUCCCGCCCCg -3' miRNA: 3'- -CGGaGGCa---CAGCaaaga-----AGGGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 27953 | 0.71 | 0.762968 |
Target: 5'- cGCC-CCGgggGUCGguggUCgUUCCCGCCUg -3' miRNA: 3'- -CGGaGGCa--CAGCaa--AG-AAGGGUGGGg -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 27551 | 0.71 | 0.762968 |
Target: 5'- gGCCuUCCGUGUCGcg-CgcgCCCGCCg- -3' miRNA: 3'- -CGG-AGGCACAGCaaaGaa-GGGUGGgg -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 17585 | 0.71 | 0.772382 |
Target: 5'- uCgUCCGUGUCGUcc---UCCGCCCCg -3' miRNA: 3'- cGgAGGCACAGCAaagaaGGGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 124614 | 0.71 | 0.781672 |
Target: 5'- gGCC-CCGgggGcCGUg-CUUCUCGCCCCg -3' miRNA: 3'- -CGGaGGCa--CaGCAaaGAAGGGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 8418 | 0.7 | 0.817409 |
Target: 5'- cGCaC-CUGUGUuuUGUuuUUCUUCCCAUCCCc -3' miRNA: 3'- -CG-GaGGCACA--GCA--AAGAAGGGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 145116 | 0.7 | 0.817409 |
Target: 5'- cGCCccCCGUGUCccugcggggGgcUCUggccCCCGCCCCc -3' miRNA: 3'- -CGGa-GGCACAG---------CaaAGAa---GGGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 86847 | 0.7 | 0.817409 |
Target: 5'- cGCCgcgCCGUcggcGUCGUccccgUCcucCCCGCCCCc -3' miRNA: 3'- -CGGa--GGCA----CAGCAa----AGaa-GGGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 15128 | 0.7 | 0.834306 |
Target: 5'- gGUCUUCGUGgucgCGggcUCUgggcccCCCGCCCCc -3' miRNA: 3'- -CGGAGGCACa---GCaa-AGAa-----GGGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 89385 | 0.7 | 0.834306 |
Target: 5'- aUCUCCG-GUCcg--CUcCCCGCCCCg -3' miRNA: 3'- cGGAGGCaCAGcaaaGAaGGGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 17526 | 0.69 | 0.85047 |
Target: 5'- cGCCgCCGUcGUCGUcg---UCCGCCCCc -3' miRNA: 3'- -CGGaGGCA-CAGCAaagaaGGGUGGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 27427 | 0.69 | 0.85047 |
Target: 5'- gGCCUCCGg--CGUUUCgcgUCCgCGuccUCCCg -3' miRNA: 3'- -CGGAGGCacaGCAAAGa--AGG-GU---GGGG- -5' |
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31013 | 3' | -54.3 | NC_006560.1 | + | 18437 | 0.69 | 0.865096 |
Target: 5'- cGCCgcggCCGg--CGgagUCUUCCCcgaggacGCCCCg -3' miRNA: 3'- -CGGa---GGCacaGCaa-AGAAGGG-------UGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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