miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31013 5' -55 NC_006560.1 + 116038 1.1 0.003603
Target:  5'- cCGGGGCCGACAGAAACAGUCUCGAGGc -3'
miRNA:   3'- -GCCCCGGCUGUCUUUGUCAGAGCUCC- -5'
31013 5' -55 NC_006560.1 + 100834 0.81 0.24663
Target:  5'- gGGGGCCGGCGGAGgggagggGCGGUgUCGGGa -3'
miRNA:   3'- gCCCCGGCUGUCUU-------UGUCAgAGCUCc -5'
31013 5' -55 NC_006560.1 + 12347 0.79 0.349365
Target:  5'- uCGGGGCUGGCGGGgcgGGC-GUCUCGAcGGg -3'
miRNA:   3'- -GCCCCGGCUGUCU---UUGuCAGAGCU-CC- -5'
31013 5' -55 NC_006560.1 + 1954 0.78 0.397882
Target:  5'- cCGGGGUCGcgccccccaggGCGGggGCGGggCUCGGGGc -3'
miRNA:   3'- -GCCCCGGC-----------UGUCuuUGUCa-GAGCUCC- -5'
31013 5' -55 NC_006560.1 + 85545 0.78 0.397882
Target:  5'- gCGGGGgcgcCCGugGGggGCGGgggcggCUCGGGGg -3'
miRNA:   3'- -GCCCC----GGCugUCuuUGUCa-----GAGCUCC- -5'
31013 5' -55 NC_006560.1 + 33604 0.77 0.429878
Target:  5'- aGGGGCCGGCGGAGACcaccaggagcagggGGgggCGGGGg -3'
miRNA:   3'- gCCCCGGCUGUCUUUG--------------UCagaGCUCC- -5'
31013 5' -55 NC_006560.1 + 132968 0.76 0.478222
Target:  5'- gCGuGGGCC--CGGggGCAGuUCUCGAGGu -3'
miRNA:   3'- -GC-CCCGGcuGUCuuUGUC-AGAGCUCC- -5'
31013 5' -55 NC_006560.1 + 6583 0.76 0.487644
Target:  5'- gGGGGCUcGgGGGGACGGgggCUCGGGGg -3'
miRNA:   3'- gCCCCGGcUgUCUUUGUCa--GAGCUCC- -5'
31013 5' -55 NC_006560.1 + 6543 0.76 0.487644
Target:  5'- gGGGGCUcGgGGGGACGGgggCUCGGGGg -3'
miRNA:   3'- gCCCCGGcUgUCUUUGUCa--GAGCUCC- -5'
31013 5' -55 NC_006560.1 + 33379 0.75 0.497153
Target:  5'- gCGGGGCCG-CGGAGAgGGg--CGGGGa -3'
miRNA:   3'- -GCCCCGGCuGUCUUUgUCagaGCUCC- -5'
31013 5' -55 NC_006560.1 + 15733 0.75 0.506745
Target:  5'- aCGGGGCCGGCacgccGGggGCGcgcgcGUC-CGGGGg -3'
miRNA:   3'- -GCCCCGGCUG-----UCuuUGU-----CAGaGCUCC- -5'
31013 5' -55 NC_006560.1 + 6789 0.74 0.565758
Target:  5'- gGGGGCuCGGgGGGAcCGGgggCUCGGGGg -3'
miRNA:   3'- gCCCCG-GCUgUCUUuGUCa--GAGCUCC- -5'
31013 5' -55 NC_006560.1 + 69454 0.74 0.565758
Target:  5'- gCGGGGCUGGCGGggGgcGUCcUGAGGc -3'
miRNA:   3'- -GCCCCGGCUGUCuuUguCAGaGCUCC- -5'
31013 5' -55 NC_006560.1 + 6639 0.74 0.565758
Target:  5'- gGGGGCuCGGgGGGAcCGGgggCUCGGGGg -3'
miRNA:   3'- gCCCCG-GCUgUCUUuGUCa--GAGCUCC- -5'
31013 5' -55 NC_006560.1 + 6689 0.74 0.565758
Target:  5'- gGGGGCuCGGgGGGAcCGGgggCUCGGGGg -3'
miRNA:   3'- gCCCCG-GCUgUCUUuGUCa--GAGCUCC- -5'
31013 5' -55 NC_006560.1 + 6731 0.74 0.565758
Target:  5'- gGGGGCuCGGgGGGAcCGGgggCUCGGGGg -3'
miRNA:   3'- gCCCCG-GCUgUCUUuGUCa--GAGCUCC- -5'
31013 5' -55 NC_006560.1 + 142365 0.74 0.575787
Target:  5'- gGGGGCCGGgGGcgGCGGcCUCcggGAGGg -3'
miRNA:   3'- gCCCCGGCUgUCuuUGUCaGAG---CUCC- -5'
31013 5' -55 NC_006560.1 + 102651 0.74 0.585857
Target:  5'- gGGGGCCGccCAGAAGuCGGgggggaaCUCGGGGg -3'
miRNA:   3'- gCCCCGGCu-GUCUUU-GUCa------GAGCUCC- -5'
31013 5' -55 NC_006560.1 + 28416 0.74 0.585857
Target:  5'- cCGGGGCgGGCcGggGCGGgC-CGAGGg -3'
miRNA:   3'- -GCCCCGgCUGuCuuUGUCaGaGCUCC- -5'
31013 5' -55 NC_006560.1 + 62371 0.74 0.595959
Target:  5'- aCGGGGUCG-CGGggGguggcggcucCGGUgCUCGAGGg -3'
miRNA:   3'- -GCCCCGGCuGUCuuU----------GUCA-GAGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.