miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31013 5' -55 NC_006560.1 + 20 0.67 0.907158
Target:  5'- gCGGGGCgguucggCGGCGGggGgGGUgcgUUUGGGGg -3'
miRNA:   3'- -GCCCCG-------GCUGUCuuUgUCA---GAGCUCC- -5'
31013 5' -55 NC_006560.1 + 1954 0.78 0.397882
Target:  5'- cCGGGGUCGcgccccccaggGCGGggGCGGggCUCGGGGc -3'
miRNA:   3'- -GCCCCGGC-----------UGUCuuUGUCa-GAGCUCC- -5'
31013 5' -55 NC_006560.1 + 2856 0.66 0.94885
Target:  5'- -cGGGCCcGCAGAGGCGGUUggccagCGcGGc -3'
miRNA:   3'- gcCCCGGcUGUCUUUGUCAGa-----GCuCC- -5'
31013 5' -55 NC_006560.1 + 3934 0.72 0.717052
Target:  5'- gCGGGGgCGGCGcc-GCGGUCggcggCGAGGg -3'
miRNA:   3'- -GCCCCgGCUGUcuuUGUCAGa----GCUCC- -5'
31013 5' -55 NC_006560.1 + 4020 0.7 0.801882
Target:  5'- cCGGGGgCGGCGGcgGC-GUCcCGGGGc -3'
miRNA:   3'- -GCCCCgGCUGUCuuUGuCAGaGCUCC- -5'
31013 5' -55 NC_006560.1 + 4887 0.7 0.801882
Target:  5'- gCGGcGCCGGCGGggGCcgcGUCgcgcUCGGGGu -3'
miRNA:   3'- -GCCcCGGCUGUCuuUGu--CAG----AGCUCC- -5'
31013 5' -55 NC_006560.1 + 5103 0.69 0.859747
Target:  5'- cCGGGGUCGGCGGggGCGcggCgUCGAu- -3'
miRNA:   3'- -GCCCCGGCUGUCuuUGUca-G-AGCUcc -5'
31013 5' -55 NC_006560.1 + 5163 0.72 0.697182
Target:  5'- cCGGGGCCG-CGGggGCGGgccgCggCGAcGGc -3'
miRNA:   3'- -GCCCCGGCuGUCuuUGUCa---Ga-GCU-CC- -5'
31013 5' -55 NC_006560.1 + 5463 0.71 0.765316
Target:  5'- cCGGGGgCGcCGGGGcuccgagcGCGGUCgcggCGAGGg -3'
miRNA:   3'- -GCCCCgGCuGUCUU--------UGUCAGa---GCUCC- -5'
31013 5' -55 NC_006560.1 + 5671 0.67 0.917755
Target:  5'- cCGGGGC--GCGGggGCGGcCggcggcgccgcccgUCGAGGa -3'
miRNA:   3'- -GCCCCGgcUGUCuuUGUCaG--------------AGCUCC- -5'
31013 5' -55 NC_006560.1 + 6486 0.66 0.952937
Target:  5'- cCGGGaacgccgcGCCGACGGAAccucgcaggugaGCGGUCguccCGGGa -3'
miRNA:   3'- -GCCC--------CGGCUGUCUU------------UGUCAGa---GCUCc -5'
31013 5' -55 NC_006560.1 + 6543 0.76 0.487644
Target:  5'- gGGGGCUcGgGGGGACGGgggCUCGGGGg -3'
miRNA:   3'- gCCCCGGcUgUCUUUGUCa--GAGCUCC- -5'
31013 5' -55 NC_006560.1 + 6583 0.76 0.487644
Target:  5'- gGGGGCUcGgGGGGACGGgggCUCGGGGg -3'
miRNA:   3'- gCCCCGGcUgUCUUUGUCa--GAGCUCC- -5'
31013 5' -55 NC_006560.1 + 6639 0.74 0.565758
Target:  5'- gGGGGCuCGGgGGGAcCGGgggCUCGGGGg -3'
miRNA:   3'- gCCCCG-GCUgUCUUuGUCa--GAGCUCC- -5'
31013 5' -55 NC_006560.1 + 6689 0.74 0.565758
Target:  5'- gGGGGCuCGGgGGGAcCGGgggCUCGGGGg -3'
miRNA:   3'- gCCCCG-GCUgUCUUuGUCa--GAGCUCC- -5'
31013 5' -55 NC_006560.1 + 6731 0.74 0.565758
Target:  5'- gGGGGCuCGGgGGGAcCGGgggCUCGGGGg -3'
miRNA:   3'- gCCCCG-GCUgUCUUuGUCa--GAGCUCC- -5'
31013 5' -55 NC_006560.1 + 6789 0.74 0.565758
Target:  5'- gGGGGCuCGGgGGGAcCGGgggCUCGGGGg -3'
miRNA:   3'- gCCCCG-GCUgUCUUuGUCa--GAGCUCC- -5'
31013 5' -55 NC_006560.1 + 9957 0.73 0.656866
Target:  5'- aCGGGGCguCGGCGGGcgAGCGGcCUCGGGc -3'
miRNA:   3'- -GCCCCG--GCUGUCU--UUGUCaGAGCUCc -5'
31013 5' -55 NC_006560.1 + 10540 0.65 0.956799
Target:  5'- gGGGcGCCGACGcacugggcgucGAcGACGGUCUccagcaccugccCGGGGg -3'
miRNA:   3'- gCCC-CGGCUGU-----------CU-UUGUCAGA------------GCUCC- -5'
31013 5' -55 NC_006560.1 + 11600 0.68 0.895158
Target:  5'- gCGGGGuuGGgGGAGACcGg--CGGGGg -3'
miRNA:   3'- -GCCCCggCUgUCUUUGuCagaGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.