miRNA display CGI


Results 1 - 20 of 412 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31014 3' -68.3 NC_006560.1 + 114965 1.08 0.000315
Target:  5'- cGCCCCACCCCCGCCCGCUCCCUCCCGc -3'
miRNA:   3'- -CGGGGUGGGGGCGGGCGAGGGAGGGC- -5'
31014 3' -68.3 NC_006560.1 + 105614 0.84 0.022034
Target:  5'- cGCCCCccgGCCCCCGgCCGC-CCCUCCCc -3'
miRNA:   3'- -CGGGG---UGGGGGCgGGCGaGGGAGGGc -5'
31014 3' -68.3 NC_006560.1 + 78288 0.83 0.023764
Target:  5'- cGCCCCGgCCCCGCCCGCccacgCCCUCuaCCGg -3'
miRNA:   3'- -CGGGGUgGGGGCGGGCGa----GGGAG--GGC- -5'
31014 3' -68.3 NC_006560.1 + 25498 0.81 0.033783
Target:  5'- cGCCCgCgACCCCCGCCCGCgacCCCcgCCCGc -3'
miRNA:   3'- -CGGG-G-UGGGGGCGGGCGa--GGGa-GGGC- -5'
31014 3' -68.3 NC_006560.1 + 53509 0.81 0.038286
Target:  5'- cCCCCGCCCCCgcGCCCGCcgcgCCgUCCCGu -3'
miRNA:   3'- cGGGGUGGGGG--CGGGCGa---GGgAGGGC- -5'
31014 3' -68.3 NC_006560.1 + 79514 0.8 0.041266
Target:  5'- cGCCCgGCCCaCCGUCgGCUCCCUCgCCa -3'
miRNA:   3'- -CGGGgUGGG-GGCGGgCGAGGGAG-GGc -5'
31014 3' -68.3 NC_006560.1 + 6345 0.8 0.042308
Target:  5'- cGCCCCGCCCCgGCCCGC-CCUUcggggcgggCCCGc -3'
miRNA:   3'- -CGGGGUGGGGgCGGGCGaGGGA---------GGGC- -5'
31014 3' -68.3 NC_006560.1 + 144972 0.8 0.04414
Target:  5'- gGCCCCGCCCCCccgacggaccccggGCCCGCgcgCCCUcgggcggagccCCCGg -3'
miRNA:   3'- -CGGGGUGGGGG--------------CGGGCGa--GGGA-----------GGGC- -5'
31014 3' -68.3 NC_006560.1 + 89245 0.8 0.045593
Target:  5'- cGCCCCGCCCCgGCCCGagCCCgCCCu -3'
miRNA:   3'- -CGGGGUGGGGgCGGGCgaGGGaGGGc -5'
31014 3' -68.3 NC_006560.1 + 86875 0.8 0.045593
Target:  5'- uCCCCGCCCCCGCCgGCggucgcgUCCUCCgGg -3'
miRNA:   3'- cGGGGUGGGGGCGGgCGa------GGGAGGgC- -5'
31014 3' -68.3 NC_006560.1 + 74005 0.79 0.04792
Target:  5'- cGCCCCGCCCCCGCUCGCcacgagCCC-CgCGg -3'
miRNA:   3'- -CGGGGUGGGGGCGGGCGa-----GGGaGgGC- -5'
31014 3' -68.3 NC_006560.1 + 31296 0.79 0.04792
Target:  5'- cGCUCCGCCUCCGCCCGCcgcuccgccCCCUgCCGa -3'
miRNA:   3'- -CGGGGUGGGGGCGGGCGa--------GGGAgGGC- -5'
31014 3' -68.3 NC_006560.1 + 145614 0.79 0.050238
Target:  5'- cGCCCCaccugccGCCCCCGCCCGC-CCUgcggCCCc -3'
miRNA:   3'- -CGGGG-------UGGGGGCGGGCGaGGGa---GGGc -5'
31014 3' -68.3 NC_006560.1 + 39177 0.79 0.050363
Target:  5'- cGCCCCccgucgGCCCCCGCgccCCGgUCCCUCUCGu -3'
miRNA:   3'- -CGGGG------UGGGGGCG---GGCgAGGGAGGGC- -5'
31014 3' -68.3 NC_006560.1 + 119583 0.79 0.051629
Target:  5'- aGCgCCCGgCCCCGCCCuGCUCCCcggcggggCCCGa -3'
miRNA:   3'- -CG-GGGUgGGGGCGGG-CGAGGGa-------GGGC- -5'
31014 3' -68.3 NC_006560.1 + 149287 0.79 0.051629
Target:  5'- cGgCCCGCCCCgGCCCGC-CCCggCCCa -3'
miRNA:   3'- -CgGGGUGGGGgCGGGCGaGGGa-GGGc -5'
31014 3' -68.3 NC_006560.1 + 24055 0.79 0.05439
Target:  5'- cGCCCgCGCCCCCgGCCCGCggcgcucaccgcccgCCCgCCCGg -3'
miRNA:   3'- -CGGG-GUGGGGG-CGGGCGa--------------GGGaGGGC- -5'
31014 3' -68.3 NC_006560.1 + 143117 0.78 0.05701
Target:  5'- aGCCCC-CCCCCGCCgGuCUCUC-CCCGu -3'
miRNA:   3'- -CGGGGuGGGGGCGGgC-GAGGGaGGGC- -5'
31014 3' -68.3 NC_006560.1 + 79869 0.78 0.05701
Target:  5'- cCCCCGCCCCCGCCaCGCcucggcaCCCgCCCGu -3'
miRNA:   3'- cGGGGUGGGGGCGG-GCGa------GGGaGGGC- -5'
31014 3' -68.3 NC_006560.1 + 34001 0.78 0.058439
Target:  5'- cGCuCUCGCCUCCGuCCCGCcCCCUCCCc -3'
miRNA:   3'- -CG-GGGUGGGGGC-GGGCGaGGGAGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.