miRNA display CGI


Results 1 - 20 of 412 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31014 3' -68.3 NC_006560.1 + 101 0.74 0.118492
Target:  5'- cGCCCCGCCCCCGCggCCGCggCCggCgCGg -3'
miRNA:   3'- -CGGGGUGGGGGCG--GGCGagGGa-GgGC- -5'
31014 3' -68.3 NC_006560.1 + 146 0.75 0.090881
Target:  5'- gGCCCCGCCCCgCGgucccggcCCCGC-CCCgcggUCCCGg -3'
miRNA:   3'- -CGGGGUGGGG-GC--------GGGCGaGGG----AGGGC- -5'
31014 3' -68.3 NC_006560.1 + 328 0.77 0.076614
Target:  5'- gGCCCCgGCCCCCuCUCGC-CCCUCUCGc -3'
miRNA:   3'- -CGGGG-UGGGGGcGGGCGaGGGAGGGC- -5'
31014 3' -68.3 NC_006560.1 + 399 0.75 0.095401
Target:  5'- uGCgCCCGCCCCCcCCCGC-CCCgCCUGu -3'
miRNA:   3'- -CG-GGGUGGGGGcGGGCGaGGGaGGGC- -5'
31014 3' -68.3 NC_006560.1 + 433 0.69 0.259234
Target:  5'- cCCCgGCCUCCGCggccuCCGCggCCUCCCc -3'
miRNA:   3'- cGGGgUGGGGGCG-----GGCGagGGAGGGc -5'
31014 3' -68.3 NC_006560.1 + 484 0.73 0.143288
Target:  5'- cGUCCCgGCCCCCGUCgGUcucgCUCUCCCGc -3'
miRNA:   3'- -CGGGG-UGGGGGCGGgCGa---GGGAGGGC- -5'
31014 3' -68.3 NC_006560.1 + 545 0.71 0.188118
Target:  5'- cGCCCCGgguccccggcguCCCCCGCgcgccccgucggucUCGCUCUC-CCCGg -3'
miRNA:   3'- -CGGGGU------------GGGGGCG--------------GGCGAGGGaGGGC- -5'
31014 3' -68.3 NC_006560.1 + 700 0.76 0.082445
Target:  5'- gGCCCCGuCCCCC-CCCGCggcCCCgUCCCc -3'
miRNA:   3'- -CGGGGU-GGGGGcGGGCGa--GGG-AGGGc -5'
31014 3' -68.3 NC_006560.1 + 735 0.76 0.082445
Target:  5'- gGCCCCGuCCCCC-CCCGCggcCCCgUCCCc -3'
miRNA:   3'- -CGGGGU-GGGGGcGGGCGa--GGG-AGGGc -5'
31014 3' -68.3 NC_006560.1 + 762 0.66 0.408903
Target:  5'- nCCCC-CCCCCGCggCGCgggUCCUUUCUGg -3'
miRNA:   3'- cGGGGuGGGGGCGg-GCG---AGGGAGGGC- -5'
31014 3' -68.3 NC_006560.1 + 839 0.69 0.259234
Target:  5'- cGCCCacgaGgCCCCGCgCGCgCCCgCCCa -3'
miRNA:   3'- -CGGGg---UgGGGGCGgGCGaGGGaGGGc -5'
31014 3' -68.3 NC_006560.1 + 872 0.75 0.105086
Target:  5'- cCCCCGCCCCCucgcgcGCCCGCcCCC-CgCCGg -3'
miRNA:   3'- cGGGGUGGGGG------CGGGCGaGGGaG-GGC- -5'
31014 3' -68.3 NC_006560.1 + 949 0.72 0.161113
Target:  5'- aGCCCCGCCCCCgaucuucacuagGCCUGCacgCCCgggggcgcgCCCc -3'
miRNA:   3'- -CGGGGUGGGGG------------CGGGCGa--GGGa--------GGGc -5'
31014 3' -68.3 NC_006560.1 + 999 0.74 0.121358
Target:  5'- cGCCCCGgccggggcgccgUCUCCGcCCCGCcgucuccgCCCUCCCGg -3'
miRNA:   3'- -CGGGGU------------GGGGGC-GGGCGa-------GGGAGGGC- -5'
31014 3' -68.3 NC_006560.1 + 1130 0.68 0.295076
Target:  5'- cGCCCC-CCUCCgGCCCGgcCUCCggggUUCCUGg -3'
miRNA:   3'- -CGGGGuGGGGG-CGGGC--GAGG----GAGGGC- -5'
31014 3' -68.3 NC_006560.1 + 1215 0.67 0.355862
Target:  5'- uCCCCgggggcgggGCCCCUGCCgCGCcCCCacgcagcCCCGg -3'
miRNA:   3'- cGGGG---------UGGGGGCGG-GCGaGGGa------GGGC- -5'
31014 3' -68.3 NC_006560.1 + 1272 0.73 0.130347
Target:  5'- aGCCCCcgcgaaGCCCCCGCCgCGCcgggCCg-CCCGg -3'
miRNA:   3'- -CGGGG------UGGGGGCGG-GCGa---GGgaGGGC- -5'
31014 3' -68.3 NC_006560.1 + 1384 0.69 0.248102
Target:  5'- cGCCCCucCCCCCGCggCC-CUCgCCcCCCGc -3'
miRNA:   3'- -CGGGGu-GGGGGCG--GGcGAG-GGaGGGC- -5'
31014 3' -68.3 NC_006560.1 + 1415 0.78 0.064506
Target:  5'- gGCCCuCGCCCCCcgcgGCCCucGCccCCCUCCCGg -3'
miRNA:   3'- -CGGG-GUGGGGG----CGGG--CGa-GGGAGGGC- -5'
31014 3' -68.3 NC_006560.1 + 1569 0.68 0.276692
Target:  5'- uCCCCucuuccCCCUCGCgCGCcCCCUCCUc -3'
miRNA:   3'- cGGGGu-----GGGGGCGgGCGaGGGAGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.