miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31014 5' -55.5 NC_006560.1 + 114999 1.11 0.002684
Target:  5'- cGCCAGGAUGACGGACGGGUUCGAGUCc -3'
miRNA:   3'- -CGGUCCUACUGCCUGCCCAAGCUCAG- -5'
31014 5' -55.5 NC_006560.1 + 3325 0.76 0.446864
Target:  5'- gGCCGGGGgcGCGGGCGGGcggcgUCGGcGUCg -3'
miRNA:   3'- -CGGUCCUacUGCCUGCCCa----AGCU-CAG- -5'
31014 5' -55.5 NC_006560.1 + 3374 0.76 0.455977
Target:  5'- cGgCGGGcgGGCGGGCGGGcgCGGGcCg -3'
miRNA:   3'- -CgGUCCuaCUGCCUGCCCaaGCUCaG- -5'
31014 5' -55.5 NC_006560.1 + 147046 0.75 0.465189
Target:  5'- gGCCGGGGggcGGCGGggggagGCGGGcggCGAGUCg -3'
miRNA:   3'- -CGGUCCUa--CUGCC------UGCCCaa-GCUCAG- -5'
31014 5' -55.5 NC_006560.1 + 59508 0.75 0.481068
Target:  5'- gGCCGGugacgacgacugaaGA-GGCGGGCGGGcUCGGGUCg -3'
miRNA:   3'- -CGGUC--------------CUaCUGCCUGCCCaAGCUCAG- -5'
31014 5' -55.5 NC_006560.1 + 14869 0.74 0.521363
Target:  5'- cGCCGGGggGGCGGGgagaggucguuccCGGGccCGGGUCg -3'
miRNA:   3'- -CGGUCCuaCUGCCU-------------GCCCaaGCUCAG- -5'
31014 5' -55.5 NC_006560.1 + 82746 0.74 0.52234
Target:  5'- cCCGGGAcGGCGGACGaGGacgUCGAgGUCg -3'
miRNA:   3'- cGGUCCUaCUGCCUGC-CCa--AGCU-CAG- -5'
31014 5' -55.5 NC_006560.1 + 34906 0.73 0.571932
Target:  5'- gGUCAGGGUGugGGGgGGGgggaCGAGg- -3'
miRNA:   3'- -CGGUCCUACugCCUgCCCaa--GCUCag -5'
31014 5' -55.5 NC_006560.1 + 100287 0.73 0.601224
Target:  5'- cGCCAGG-UGGCGGAaGGGggCGAuggcggcGUCg -3'
miRNA:   3'- -CGGUCCuACUGCCUgCCCaaGCU-------CAG- -5'
31014 5' -55.5 NC_006560.1 + 146962 0.72 0.622564
Target:  5'- gGCCGGGGgccgGGCcuGGGCGGGUgggCGGGg- -3'
miRNA:   3'- -CGGUCCUa---CUG--CCUGCCCAa--GCUCag -5'
31014 5' -55.5 NC_006560.1 + 33272 0.72 0.642918
Target:  5'- gGUCGGGGgccugGGCGG-CGGGggUUGGGUCg -3'
miRNA:   3'- -CGGUCCUa----CUGCCuGCCCa-AGCUCAG- -5'
31014 5' -55.5 NC_006560.1 + 11672 0.72 0.64902
Target:  5'- uCCGGGGgcucggcgguccgGGCGGGCGGGaUCGGcGUCg -3'
miRNA:   3'- cGGUCCUa------------CUGCCUGCCCaAGCU-CAG- -5'
31014 5' -55.5 NC_006560.1 + 148142 0.72 0.663238
Target:  5'- cGCagGGGAgcggGGgGGACGGGUguaggUGAGUCg -3'
miRNA:   3'- -CGg-UCCUa---CUgCCUGCCCAa----GCUCAG- -5'
31014 5' -55.5 NC_006560.1 + 34055 0.72 0.663238
Target:  5'- gGUCGGGGUGA-GGAgGGGggCGAGg- -3'
miRNA:   3'- -CGGUCCUACUgCCUgCCCaaGCUCag -5'
31014 5' -55.5 NC_006560.1 + 11633 0.72 0.669318
Target:  5'- uCCGGGGgcucggcgguccgGGCGGGCGGGg--GAGUCg -3'
miRNA:   3'- cGGUCCUa------------CUGCCUGCCCaagCUCAG- -5'
31014 5' -55.5 NC_006560.1 + 73974 0.71 0.69351
Target:  5'- uGCgGGaGGUGGCGGcGCGGGccCGGGUCc -3'
miRNA:   3'- -CGgUC-CUACUGCC-UGCCCaaGCUCAG- -5'
31014 5' -55.5 NC_006560.1 + 138426 0.7 0.733122
Target:  5'- gGCCGGGAUcgcGACGGugGuguGGggCGAGg- -3'
miRNA:   3'- -CGGUCCUA---CUGCCugC---CCaaGCUCag -5'
31014 5' -55.5 NC_006560.1 + 15254 0.7 0.752444
Target:  5'- gGUCGGGGaGGCGGAcgcCGGGggCGcGGUCg -3'
miRNA:   3'- -CGGUCCUaCUGCCU---GCCCaaGC-UCAG- -5'
31014 5' -55.5 NC_006560.1 + 147310 0.7 0.752444
Target:  5'- cGCCGGGcgGAaGGugGGGUccgcugCGAGa- -3'
miRNA:   3'- -CGGUCCuaCUgCCugCCCAa-----GCUCag -5'
31014 5' -55.5 NC_006560.1 + 3296 0.7 0.761952
Target:  5'- cGCCGGGcgGGCGGGCGG---UGAG-Cg -3'
miRNA:   3'- -CGGUCCuaCUGCCUGCCcaaGCUCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.