miRNA display CGI


Results 1 - 20 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31014 5' -55.5 NC_006560.1 + 1870 0.69 0.807609
Target:  5'- gGCgGGGGUcGCGGGCGGGggucgCGGG-Cg -3'
miRNA:   3'- -CGgUCCUAcUGCCUGCCCaa---GCUCaG- -5'
31014 5' -55.5 NC_006560.1 + 2919 0.66 0.923163
Target:  5'- uCCAGGcgGGCgGGGCGGGg--GAGa- -3'
miRNA:   3'- cGGUCCuaCUG-CCUGCCCaagCUCag -5'
31014 5' -55.5 NC_006560.1 + 3296 0.7 0.761952
Target:  5'- cGCCGGGcgGGCGGGCGG---UGAG-Cg -3'
miRNA:   3'- -CGGUCCuaCUGCCUGCCcaaGCUCaG- -5'
31014 5' -55.5 NC_006560.1 + 3325 0.76 0.446864
Target:  5'- gGCCGGGGgcGCGGGCGGGcggcgUCGGcGUCg -3'
miRNA:   3'- -CGGUCCUacUGCCUGCCCa----AGCU-CAG- -5'
31014 5' -55.5 NC_006560.1 + 3374 0.76 0.455977
Target:  5'- cGgCGGGcgGGCGGGCGGGcgCGGGcCg -3'
miRNA:   3'- -CgGUCCuaCUGCCUGCCCaaGCUCaG- -5'
31014 5' -55.5 NC_006560.1 + 3414 0.67 0.899464
Target:  5'- cGCCggcGGGcgGGCGG-CGGGcgCGGG-Cg -3'
miRNA:   3'- -CGG---UCCuaCUGCCuGCCCaaGCUCaG- -5'
31014 5' -55.5 NC_006560.1 + 3736 0.66 0.91759
Target:  5'- aGCCAGGcgcGCGGGCGcGGcgCGGG-Cg -3'
miRNA:   3'- -CGGUCCuacUGCCUGC-CCaaGCUCaG- -5'
31014 5' -55.5 NC_006560.1 + 4822 0.66 0.938465
Target:  5'- aGCCcGGGUc-CGGGuCGGGgucCGAGUCg -3'
miRNA:   3'- -CGGuCCUAcuGCCU-GCCCaa-GCUCAG- -5'
31014 5' -55.5 NC_006560.1 + 4911 0.66 0.938465
Target:  5'- cGCuCGGGGUc-CGGGucCGGGUcCGAGUCc -3'
miRNA:   3'- -CG-GUCCUAcuGCCU--GCCCAaGCUCAG- -5'
31014 5' -55.5 NC_006560.1 + 6537 0.66 0.91759
Target:  5'- cGCCucGGGGgcucgGGgGGACGGGggcUCGGGg- -3'
miRNA:   3'- -CGG--UCCUa----CUgCCUGCCCa--AGCUCag -5'
31014 5' -55.5 NC_006560.1 + 6578 0.67 0.911781
Target:  5'- gGCuCGGGGgcucgGGgGGACGGGggcUCGGGg- -3'
miRNA:   3'- -CG-GUCCUa----CUgCCUGCCCa--AGCUCag -5'
31014 5' -55.5 NC_006560.1 + 8843 0.67 0.879277
Target:  5'- cGCgGGGGuuccaUGuCGGGCGGGgUCG-GUCu -3'
miRNA:   3'- -CGgUCCU-----ACuGCCUGCCCaAGCuCAG- -5'
31014 5' -55.5 NC_006560.1 + 10228 0.69 0.833185
Target:  5'- gGgUAGGGgugGGCGG-CGGGggcgCGGGUCg -3'
miRNA:   3'- -CgGUCCUa--CUGCCuGCCCaa--GCUCAG- -5'
31014 5' -55.5 NC_006560.1 + 11096 0.68 0.841359
Target:  5'- aGCCGGGggGGCGGA-GGaGggCGGGg- -3'
miRNA:   3'- -CGGUCCuaCUGCCUgCC-CaaGCUCag -5'
31014 5' -55.5 NC_006560.1 + 11633 0.72 0.669318
Target:  5'- uCCGGGGgcucggcgguccgGGCGGGCGGGg--GAGUCg -3'
miRNA:   3'- cGGUCCUa------------CUGCCUGCCCaagCUCAG- -5'
31014 5' -55.5 NC_006560.1 + 11672 0.72 0.64902
Target:  5'- uCCGGGGgcucggcgguccgGGCGGGCGGGaUCGGcGUCg -3'
miRNA:   3'- cGGUCCUa------------CUGCCUGCCCaAGCU-CAG- -5'
31014 5' -55.5 NC_006560.1 + 11960 0.66 0.923163
Target:  5'- uCCAGGGUcagguuggcuaGGCGGGgcucUGGGUccugCGGGUCg -3'
miRNA:   3'- cGGUCCUA-----------CUGCCU----GCCCAa---GCUCAG- -5'
31014 5' -55.5 NC_006560.1 + 14017 0.7 0.780618
Target:  5'- uCCgAGGGcccGGCGGACGGGgUCGcGUCg -3'
miRNA:   3'- cGG-UCCUa--CUGCCUGCCCaAGCuCAG- -5'
31014 5' -55.5 NC_006560.1 + 14197 0.68 0.849344
Target:  5'- cGCCcagggcguGGGGUGGuCGGGCGGGgcgccCGcGGUCg -3'
miRNA:   3'- -CGG--------UCCUACU-GCCUGCCCaa---GC-UCAG- -5'
31014 5' -55.5 NC_006560.1 + 14869 0.74 0.521363
Target:  5'- cGCCGGGggGGCGGGgagaggucguuccCGGGccCGGGUCg -3'
miRNA:   3'- -CGGUCCuaCUGCCU-------------GCCCaaGCUCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.