miRNA display CGI


Results 1 - 20 of 561 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31015 3' -60.5 NC_006560.1 + 114566 1.11 0.00089
Target:  5'- gCCGACAUCGCCGCGCGCCACCGCUGCc -3'
miRNA:   3'- -GGCUGUAGCGGCGCGCGGUGGCGACG- -5'
31015 3' -60.5 NC_006560.1 + 111713 0.84 0.068418
Target:  5'- cUCGACGaCGUCGCGCGCCACCuGCUGg -3'
miRNA:   3'- -GGCUGUaGCGGCGCGCGGUGG-CGACg -5'
31015 3' -60.5 NC_006560.1 + 125523 0.84 0.073906
Target:  5'- gCCGGCcgCGgUGCGCGCCGCCGCcgggGCg -3'
miRNA:   3'- -GGCUGuaGCgGCGCGCGGUGGCGa---CG- -5'
31015 3' -60.5 NC_006560.1 + 108001 0.84 0.075827
Target:  5'- gCCGGguCGUCGCCGCgcuGCGCCGCCGCgacGCg -3'
miRNA:   3'- -GGCU--GUAGCGGCG---CGCGGUGGCGa--CG- -5'
31015 3' -60.5 NC_006560.1 + 22104 0.83 0.077796
Target:  5'- gCCGACcUCGCCGC-CGCCGCCGCguccucGCg -3'
miRNA:   3'- -GGCUGuAGCGGCGcGCGGUGGCGa-----CG- -5'
31015 3' -60.5 NC_006560.1 + 72109 0.83 0.079814
Target:  5'- gCCGGCcUCGCCGCG-GCCGCC-CUGCg -3'
miRNA:   3'- -GGCUGuAGCGGCGCgCGGUGGcGACG- -5'
31015 3' -60.5 NC_006560.1 + 24978 0.83 0.081882
Target:  5'- cCCGACAcCGCCGUGcCGCUGCCGCcGCg -3'
miRNA:   3'- -GGCUGUaGCGGCGC-GCGGUGGCGaCG- -5'
31015 3' -60.5 NC_006560.1 + 22650 0.83 0.086172
Target:  5'- aCgGGCGUCGCCGCcgggcgcagcgaGCGCCGCCGC-GCg -3'
miRNA:   3'- -GgCUGUAGCGGCG------------CGCGGUGGCGaCG- -5'
31015 3' -60.5 NC_006560.1 + 150519 0.82 0.100109
Target:  5'- gCCGGCGUuuuuuucCGCgCGCGCGCCGCCGCgggaggGCc -3'
miRNA:   3'- -GGCUGUA-------GCG-GCGCGCGGUGGCGa-----CG- -5'
31015 3' -60.5 NC_006560.1 + 190 0.82 0.100109
Target:  5'- gCCGGCGUuuuuuucCGCgCGCGCGCCGCCGCgggaggGCc -3'
miRNA:   3'- -GGCUGUA-------GCG-GCGCGCGGUGGCGa-----CG- -5'
31015 3' -60.5 NC_006560.1 + 130595 0.81 0.105564
Target:  5'- gCGcACGUCGCCGCGCgGCCGgCCGCgcgGCu -3'
miRNA:   3'- gGC-UGUAGCGGCGCG-CGGU-GGCGa--CG- -5'
31015 3' -60.5 NC_006560.1 + 75188 0.81 0.111018
Target:  5'- gCGACcgCGCCGCGCugcuggagGCCGCCGC-GCg -3'
miRNA:   3'- gGCUGuaGCGGCGCG--------CGGUGGCGaCG- -5'
31015 3' -60.5 NC_006560.1 + 130521 0.81 0.111018
Target:  5'- gCCGGCcgguggCGCCGCGCGgCGCCGCgcuggGCg -3'
miRNA:   3'- -GGCUGua----GCGGCGCGCgGUGGCGa----CG- -5'
31015 3' -60.5 NC_006560.1 + 124473 0.81 0.119697
Target:  5'- uCCGGCucUCGCgGCGCGCgGCCGCcGCc -3'
miRNA:   3'- -GGCUGu-AGCGgCGCGCGgUGGCGaCG- -5'
31015 3' -60.5 NC_006560.1 + 61167 0.8 0.129002
Target:  5'- cCCGACAUCGCCGCcgGCuuccuCCACCaGCUGUg -3'
miRNA:   3'- -GGCUGUAGCGGCG--CGc----GGUGG-CGACG- -5'
31015 3' -60.5 NC_006560.1 + 5293 0.8 0.129002
Target:  5'- gUCGGCGUCGUCGuCG-GCCGCCGCgUGCg -3'
miRNA:   3'- -GGCUGUAGCGGC-GCgCGGUGGCG-ACG- -5'
31015 3' -60.5 NC_006560.1 + 37681 0.8 0.13225
Target:  5'- uCCGGCcgCGCCGgGCGCCggGCCGCUc- -3'
miRNA:   3'- -GGCUGuaGCGGCgCGCGG--UGGCGAcg -5'
31015 3' -60.5 NC_006560.1 + 24910 0.8 0.135573
Target:  5'- cCCGACGcgcCGCCGcCGCGCCuggGCCGCgGCg -3'
miRNA:   3'- -GGCUGUa--GCGGC-GCGCGG---UGGCGaCG- -5'
31015 3' -60.5 NC_006560.1 + 23762 0.79 0.146008
Target:  5'- gCCGugggccuCGUCGCCG-GCGCCgccgcGCCGCUGCu -3'
miRNA:   3'- -GGCu------GUAGCGGCgCGCGG-----UGGCGACG- -5'
31015 3' -60.5 NC_006560.1 + 89537 0.79 0.146008
Target:  5'- cCCGGCA-C-CCGCGCGCCcgGCCgGCUGCa -3'
miRNA:   3'- -GGCUGUaGcGGCGCGCGG--UGG-CGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.