miRNA display CGI


Results 1 - 20 of 561 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31015 3' -60.5 NC_006560.1 + 190 0.82 0.100109
Target:  5'- gCCGGCGUuuuuuucCGCgCGCGCGCCGCCGCgggaggGCc -3'
miRNA:   3'- -GGCUGUA-------GCG-GCGCGCGGUGGCGa-----CG- -5'
31015 3' -60.5 NC_006560.1 + 556 0.75 0.277079
Target:  5'- cCCGGCGUCccCCGCGCGCC-CCGUcgGUc -3'
miRNA:   3'- -GGCUGUAGc-GGCGCGCGGuGGCGa-CG- -5'
31015 3' -60.5 NC_006560.1 + 2050 0.73 0.368102
Target:  5'- gCCGGCGgcccagCGCaCGCGCGgCGCgGCgGCg -3'
miRNA:   3'- -GGCUGUa-----GCG-GCGCGCgGUGgCGaCG- -5'
31015 3' -60.5 NC_006560.1 + 2095 0.73 0.368102
Target:  5'- cCCGGCGUCGgCGCGCaGCacgaGCgGCgcgGCg -3'
miRNA:   3'- -GGCUGUAGCgGCGCG-CGg---UGgCGa--CG- -5'
31015 3' -60.5 NC_006560.1 + 2189 0.67 0.659836
Target:  5'- uCgGGCc-CGgCGCGCGCgGCCGC-GCg -3'
miRNA:   3'- -GgCUGuaGCgGCGCGCGgUGGCGaCG- -5'
31015 3' -60.5 NC_006560.1 + 2443 0.67 0.689079
Target:  5'- gCGcACGUUGCCGCcgcggcccagGCGCgGCgGCgGCg -3'
miRNA:   3'- gGC-UGUAGCGGCG----------CGCGgUGgCGaCG- -5'
31015 3' -60.5 NC_006560.1 + 2898 0.67 0.70837
Target:  5'- -aGAgGcCGCCGCGCGCgGCgGUccagGCg -3'
miRNA:   3'- ggCUgUaGCGGCGCGCGgUGgCGa---CG- -5'
31015 3' -60.5 NC_006560.1 + 3260 0.72 0.416521
Target:  5'- gCGGCG-CGCgGCGCcaGCCGCCGCggggGUc -3'
miRNA:   3'- gGCUGUaGCGgCGCG--CGGUGGCGa---CG- -5'
31015 3' -60.5 NC_006560.1 + 3306 0.66 0.746173
Target:  5'- gCgGGCGgugagCGCCGCGgGCCGggggCGCggGCg -3'
miRNA:   3'- -GgCUGUa----GCGGCGCgCGGUg---GCGa-CG- -5'
31015 3' -60.5 NC_006560.1 + 3348 0.66 0.736839
Target:  5'- gUCGGCGUCGgCGUcgGCGUCGgCGUcgGCg -3'
miRNA:   3'- -GGCUGUAGCgGCG--CGCGGUgGCGa-CG- -5'
31015 3' -60.5 NC_006560.1 + 3556 0.68 0.600989
Target:  5'- gCGGCggCGCCGacggaGCGCaccuGCCGCggGCu -3'
miRNA:   3'- gGCUGuaGCGGCg----CGCGg---UGGCGa-CG- -5'
31015 3' -60.5 NC_006560.1 + 3675 0.67 0.679365
Target:  5'- gCgGAgGUCGCCGCGCaggcgcaugagcGUCAgCGCgucGCg -3'
miRNA:   3'- -GgCUgUAGCGGCGCG------------CGGUgGCGa--CG- -5'
31015 3' -60.5 NC_006560.1 + 3763 0.77 0.219994
Target:  5'- gCGGCggCGCCGCGCGgCgggACCGCgGCg -3'
miRNA:   3'- gGCUGuaGCGGCGCGCgG---UGGCGaCG- -5'
31015 3' -60.5 NC_006560.1 + 3820 0.66 0.721736
Target:  5'- gCGAgGUCGCCGCcgaagcccucgacgaGCGCCuccaugACgGCgcgGCa -3'
miRNA:   3'- gGCUgUAGCGGCG---------------CGCGG------UGgCGa--CG- -5'
31015 3' -60.5 NC_006560.1 + 3912 0.69 0.581471
Target:  5'- gUCGGCGUcccccuccucCGCCGCggggGCGgCGCCGCggucgGCg -3'
miRNA:   3'- -GGCUGUA----------GCGGCG----CGCgGUGGCGa----CG- -5'
31015 3' -60.5 NC_006560.1 + 3988 0.7 0.505174
Target:  5'- gCGACA-CGCC-CGCGgCGCCGUaGCc -3'
miRNA:   3'- gGCUGUaGCGGcGCGCgGUGGCGaCG- -5'
31015 3' -60.5 NC_006560.1 + 4010 0.69 0.562087
Target:  5'- nCCGGCGagGCCGgGgGCgGCgGCgGCg -3'
miRNA:   3'- -GGCUGUagCGGCgCgCGgUGgCGaCG- -5'
31015 3' -60.5 NC_006560.1 + 4045 0.71 0.450883
Target:  5'- gCGGCggCGCgGCGCcgGCCGCgGCgGCg -3'
miRNA:   3'- gGCUGuaGCGgCGCG--CGGUGgCGaCG- -5'
31015 3' -60.5 NC_006560.1 + 4228 0.71 0.433504
Target:  5'- gCGGCA-CGgCGCGCGCgACCG-UGCc -3'
miRNA:   3'- gGCUGUaGCgGCGCGCGgUGGCgACG- -5'
31015 3' -60.5 NC_006560.1 + 4410 0.66 0.736839
Target:  5'- gCGGCGUCGCCcagcucggGCGC-CCACacgggCGCggGCg -3'
miRNA:   3'- gGCUGUAGCGG--------CGCGcGGUG-----GCGa-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.