Results 1 - 20 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31016 | 3' | -60.2 | NC_006560.1 | + | 131054 | 0.66 | 0.697182 |
Target: 5'- -cGCUGAagGUCCCGgcgGGCGCcgccgccGUGCCc -3' miRNA: 3'- uuCGACU--CGGGGCa--CCGCGa------CAUGGu -5' |
|||||||
31016 | 3' | -60.2 | NC_006560.1 | + | 93770 | 0.66 | 0.687162 |
Target: 5'- cAGCUgGAGCuCCUGcGGCGCUGcgaucCCAg -3' miRNA: 3'- uUCGA-CUCG-GGGCaCCGCGACau---GGU- -5' |
|||||||
31016 | 3' | -60.2 | NC_006560.1 | + | 75510 | 0.66 | 0.687162 |
Target: 5'- cGAGCUGcGCCgCCugcaGGCGCUG-GCCGc -3' miRNA: 3'- -UUCGACuCGG-GGca--CCGCGACaUGGU- -5' |
|||||||
31016 | 3' | -60.2 | NC_006560.1 | + | 124606 | 0.66 | 0.677097 |
Target: 5'- cAAGUggGGGCCCCG-GGgGCcGUGCUu -3' miRNA: 3'- -UUCGa-CUCGGGGCaCCgCGaCAUGGu -5' |
|||||||
31016 | 3' | -60.2 | NC_006560.1 | + | 30822 | 0.66 | 0.666995 |
Target: 5'- uGGCccaGGCCCUGgcccaGGCGCUGgGCCGg -3' miRNA: 3'- uUCGac-UCGGGGCa----CCGCGACaUGGU- -5' |
|||||||
31016 | 3' | -60.2 | NC_006560.1 | + | 46377 | 0.66 | 0.666995 |
Target: 5'- gGGGCcGAguacguguccGCCCCGggGGUGCUgGUGCCu -3' miRNA: 3'- -UUCGaCU----------CGGGGCa-CCGCGA-CAUGGu -5' |
|||||||
31016 | 3' | -60.2 | NC_006560.1 | + | 83746 | 0.66 | 0.666995 |
Target: 5'- gGAGCUcGGGCCCCucaUGGCGaCcGUGCuCAa -3' miRNA: 3'- -UUCGA-CUCGGGGc--ACCGC-GaCAUG-GU- -5' |
|||||||
31016 | 3' | -60.2 | NC_006560.1 | + | 25153 | 0.66 | 0.656866 |
Target: 5'- -cGCUGcGgCCCGUcuaccuGGCGCUGgACCGc -3' miRNA: 3'- uuCGACuCgGGGCA------CCGCGACaUGGU- -5' |
|||||||
31016 | 3' | -60.2 | NC_006560.1 | + | 83848 | 0.66 | 0.656866 |
Target: 5'- uGGCUG-GCCCUGcGGCGCcuccggGCCGa -3' miRNA: 3'- uUCGACuCGGGGCaCCGCGaca---UGGU- -5' |
|||||||
31016 | 3' | -60.2 | NC_006560.1 | + | 63337 | 0.66 | 0.646717 |
Target: 5'- uGGGCUGGGCCgUGUGGUcgaucaugauGUUG-ACCAu -3' miRNA: 3'- -UUCGACUCGGgGCACCG----------CGACaUGGU- -5' |
|||||||
31016 | 3' | -60.2 | NC_006560.1 | + | 13078 | 0.67 | 0.636557 |
Target: 5'- cGGCagGGGCCCU-UGGCGCgGUGCUc -3' miRNA: 3'- uUCGa-CUCGGGGcACCGCGaCAUGGu -5' |
|||||||
31016 | 3' | -60.2 | NC_006560.1 | + | 22163 | 0.67 | 0.636557 |
Target: 5'- gGAGgaGAcGgCCCG-GGCGCUGUccccGCCGu -3' miRNA: 3'- -UUCgaCU-CgGGGCaCCGCGACA----UGGU- -5' |
|||||||
31016 | 3' | -60.2 | NC_006560.1 | + | 119750 | 0.67 | 0.626394 |
Target: 5'- -uGCgUGAcgGCCUgaCGggGGCGCUGUGCCGg -3' miRNA: 3'- uuCG-ACU--CGGG--GCa-CCGCGACAUGGU- -5' |
|||||||
31016 | 3' | -60.2 | NC_006560.1 | + | 44577 | 0.67 | 0.626394 |
Target: 5'- cAGCUGGGCCCCGacacGGCGa---GCCu -3' miRNA: 3'- uUCGACUCGGGGCa---CCGCgacaUGGu -5' |
|||||||
31016 | 3' | -60.2 | NC_006560.1 | + | 51880 | 0.67 | 0.626394 |
Target: 5'- -cGCUcGGGCCCCG-GGCGggGUGgCGg -3' miRNA: 3'- uuCGA-CUCGGGGCaCCGCgaCAUgGU- -5' |
|||||||
31016 | 3' | -60.2 | NC_006560.1 | + | 87157 | 0.67 | 0.616234 |
Target: 5'- -cGCUGcgcgGGCCCgGcGGCGUaGUACCGg -3' miRNA: 3'- uuCGAC----UCGGGgCaCCGCGaCAUGGU- -5' |
|||||||
31016 | 3' | -60.2 | NC_006560.1 | + | 70098 | 0.67 | 0.615219 |
Target: 5'- cAGCUccGCCCCGUGGCccaGCUgccccccGUGCCc -3' miRNA: 3'- uUCGAcuCGGGGCACCG---CGA-------CAUGGu -5' |
|||||||
31016 | 3' | -60.2 | NC_006560.1 | + | 128286 | 0.67 | 0.606087 |
Target: 5'- gGGGgaGGGCCCCGggGGCGCgc--CCGc -3' miRNA: 3'- -UUCgaCUCGGGGCa-CCGCGacauGGU- -5' |
|||||||
31016 | 3' | -60.2 | NC_006560.1 | + | 142752 | 0.67 | 0.606087 |
Target: 5'- cGGCgcccGGGCCCCGggGGCGCgGgagcgGCCc -3' miRNA: 3'- uUCGa---CUCGGGGCa-CCGCGaCa----UGGu -5' |
|||||||
31016 | 3' | -60.2 | NC_006560.1 | + | 1512 | 0.67 | 0.585857 |
Target: 5'- gGAGCgcgugcaucGGGCCCCG-GGCGCgcgcccgGCCAc -3' miRNA: 3'- -UUCGa--------CUCGGGGCaCCGCGaca----UGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home