miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31016 5' -64.3 NC_006560.1 + 113850 1.06 0.00087
Target:  5'- gGACGGGCCUGCACCCCGGGAUCGGCUu -3'
miRNA:   3'- -CUGCCCGGACGUGGGGCCCUAGCCGA- -5'
31016 5' -64.3 NC_006560.1 + 93859 0.81 0.061097
Target:  5'- cGGCGGcGCCUGCGCCCgGGGcuggCGGCg -3'
miRNA:   3'- -CUGCC-CGGACGUGGGgCCCua--GCCGa -5'
31016 5' -64.3 NC_006560.1 + 45743 0.78 0.096486
Target:  5'- cGCGGGCUcGCGCCCCcgccaGGGGUUGGCg -3'
miRNA:   3'- cUGCCCGGaCGUGGGG-----CCCUAGCCGa -5'
31016 5' -64.3 NC_006560.1 + 127485 0.76 0.120779
Target:  5'- aGACGGGCUcGcCGCCCgCGGGcgCGGCg -3'
miRNA:   3'- -CUGCCCGGaC-GUGGG-GCCCuaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 69668 0.75 0.154369
Target:  5'- -cCGcGCCcGcCACCCCGGGGUCGGCg -3'
miRNA:   3'- cuGCcCGGaC-GUGGGGCCCUAGCCGa -5'
31016 5' -64.3 NC_006560.1 + 97735 0.75 0.158159
Target:  5'- cGCGuGGCCgcGCGCCCCGGGA-CGuGCUa -3'
miRNA:   3'- cUGC-CCGGa-CGUGGGGCCCUaGC-CGA- -5'
31016 5' -64.3 NC_006560.1 + 141567 0.74 0.165992
Target:  5'- cGGCGGGCCcgGCucgACCCCGGcGG-CGGCg -3'
miRNA:   3'- -CUGCCCGGa-CG---UGGGGCC-CUaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 118374 0.74 0.165992
Target:  5'- cGCGGGCCUGgAgcCCCCGGGGggcgggCGGUUc -3'
miRNA:   3'- cUGCCCGGACgU--GGGGCCCUa-----GCCGA- -5'
31016 5' -64.3 NC_006560.1 + 108525 0.74 0.174172
Target:  5'- cGGCGGGCCcggggGCGCgUCGGGG-CGGCa -3'
miRNA:   3'- -CUGCCCGGa----CGUGgGGCCCUaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 118406 0.74 0.178395
Target:  5'- -uCGGGCCcG-ACCCCGGGGcgCGGCUa -3'
miRNA:   3'- cuGCCCGGaCgUGGGGCCCUa-GCCGA- -5'
31016 5' -64.3 NC_006560.1 + 535 0.74 0.182708
Target:  5'- cGGCcGGCC-GCGCCCCGGGucccCGGCg -3'
miRNA:   3'- -CUGcCCGGaCGUGGGGCCCua--GCCGa -5'
31016 5' -64.3 NC_006560.1 + 81430 0.74 0.182708
Target:  5'- cGCGGGCCgggGCgGCCCCGGucgCGGCg -3'
miRNA:   3'- cUGCCCGGa--CG-UGGGGCCcuaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 20961 0.74 0.187114
Target:  5'- cGGCGGGCCggccgcgGCGCCgCCGGcuuuauGUCGGCg -3'
miRNA:   3'- -CUGCCCGGa------CGUGG-GGCCc-----UAGCCGa -5'
31016 5' -64.3 NC_006560.1 + 28196 0.73 0.200896
Target:  5'- -cCGGGCCgGCGgCCCGGGcggggagcGUCGGCc -3'
miRNA:   3'- cuGCCCGGaCGUgGGGCCC--------UAGCCGa -5'
31016 5' -64.3 NC_006560.1 + 133503 0.73 0.210568
Target:  5'- cGCGagcGGCC-GCGCCggCCGGGGUCGGCg -3'
miRNA:   3'- cUGC---CCGGaCGUGG--GGCCCUAGCCGa -5'
31016 5' -64.3 NC_006560.1 + 10250 0.72 0.231116
Target:  5'- cGCGGGUCgcgGCgGCCCCGGccUCGGCUc -3'
miRNA:   3'- cUGCCCGGa--CG-UGGGGCCcuAGCCGA- -5'
31016 5' -64.3 NC_006560.1 + 11133 0.72 0.231116
Target:  5'- aGCGGGCgUcgaGgGCCCCGGGG-CGGCg -3'
miRNA:   3'- cUGCCCGgA---CgUGGGGCCCUaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 15721 0.72 0.235423
Target:  5'- cGGCGGGCCggcacggggccgGCACgCCGGGggCGcGCg -3'
miRNA:   3'- -CUGCCCGGa-----------CGUGgGGCCCuaGC-CGa -5'
31016 5' -64.3 NC_006560.1 + 47010 0.72 0.236511
Target:  5'- cGCGGGCC-GCGCCCgCGGGcgcucgcaggCGGCg -3'
miRNA:   3'- cUGCCCGGaCGUGGG-GCCCua--------GCCGa -5'
31016 5' -64.3 NC_006560.1 + 68430 0.72 0.236511
Target:  5'- cGGCGGGaCUGCgcaccgcggccGCCCUGGGGcCGGCg -3'
miRNA:   3'- -CUGCCCgGACG-----------UGGGGCCCUaGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.