miRNA display CGI


Results 1 - 20 of 139 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31016 5' -64.3 NC_006560.1 + 78 0.66 0.52797
Target:  5'- gGGCGGGCCcuccccGCGCCCCGcgccccgcccccgcGGccgCGGCc -3'
miRNA:   3'- -CUGCCCGGa-----CGUGGGGC--------------CCua-GCCGa -5'
31016 5' -64.3 NC_006560.1 + 136 0.66 0.549672
Target:  5'- gGGCgGGGCCgGCcccGCCCCGcGGuccCGGCc -3'
miRNA:   3'- -CUG-CCCGGaCG---UGGGGC-CCua-GCCGa -5'
31016 5' -64.3 NC_006560.1 + 535 0.74 0.182708
Target:  5'- cGGCcGGCC-GCGCCCCGGGucccCGGCg -3'
miRNA:   3'- -CUGcCCGGaCGUGGGGCCCua--GCCGa -5'
31016 5' -64.3 NC_006560.1 + 971 0.71 0.277268
Target:  5'- ---aGGCCUGCACgCCCGGGggCGcGCc -3'
miRNA:   3'- cugcCCGGACGUG-GGGCCCuaGC-CGa -5'
31016 5' -64.3 NC_006560.1 + 2175 0.7 0.330482
Target:  5'- cGGCGGGCa-GgGCCUCGGGccCGGCg -3'
miRNA:   3'- -CUGCCCGgaCgUGGGGCCCuaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 2652 0.66 0.520496
Target:  5'- cGACGGGCCcgucgGCGggccacuCCUCGGG--CGGCa -3'
miRNA:   3'- -CUGCCCGGa----CGU-------GGGGCCCuaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 3321 0.67 0.457975
Target:  5'- cGCGGGCCggggGCGCgggCGGGcggcGUCGGCg -3'
miRNA:   3'- cUGCCCGGa---CGUGgg-GCCC----UAGCCGa -5'
31016 5' -64.3 NC_006560.1 + 3428 0.68 0.398886
Target:  5'- cGGCGGGCgCggGCGCCCgCGGGggCGaggaGCUc -3'
miRNA:   3'- -CUGCCCG-Ga-CGUGGG-GCCCuaGC----CGA- -5'
31016 5' -64.3 NC_006560.1 + 3647 0.66 0.521428
Target:  5'- cGACGgcGGCCUcgGCGCCgCCGGGGacgCGGa- -3'
miRNA:   3'- -CUGC--CCGGA--CGUGG-GGCCCUa--GCCga -5'
31016 5' -64.3 NC_006560.1 + 3777 0.66 0.520496
Target:  5'- cGGCGGGaCCgcgGCGCgcgcggccgccagCCCGGGcaCGGCg -3'
miRNA:   3'- -CUGCCC-GGa--CGUG-------------GGGCCCuaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 4012 0.68 0.387666
Target:  5'- cGGCGaGGCCgggggcggcggcgGCGUCCCGGGG-CGGCg -3'
miRNA:   3'- -CUGC-CCGGa------------CGUGGGGCCCUaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 4509 0.66 0.518634
Target:  5'- gGGCGGcugucgcccaggccGCCguagagcacGCGCCCCGGGGgcgggggcUCGGCc -3'
miRNA:   3'- -CUGCC--------------CGGa--------CGUGGGGCCCU--------AGCCGa -5'
31016 5' -64.3 NC_006560.1 + 5085 0.69 0.375099
Target:  5'- cGGCGuGCg-GCGCgccgCCCGGGGUCGGCg -3'
miRNA:   3'- -CUGCcCGgaCGUG----GGGCCCUAGCCGa -5'
31016 5' -64.3 NC_006560.1 + 5158 0.67 0.466795
Target:  5'- -cCGGGCCgGgGCCgCGGGGgcgggccgCGGCg -3'
miRNA:   3'- cuGCCCGGaCgUGGgGCCCUa-------GCCGa -5'
31016 5' -64.3 NC_006560.1 + 5643 0.67 0.455346
Target:  5'- cGACGGGCg-GCgcccggccggcuccGCCCCGGGGcgcgggggCGGCc -3'
miRNA:   3'- -CUGCCCGgaCG--------------UGGGGCCCUa-------GCCGa -5'
31016 5' -64.3 NC_006560.1 + 9966 0.66 0.521428
Target:  5'- cGGCGGGCgaGCgGCCUCGGGcagccgCGGgUg -3'
miRNA:   3'- -CUGCCCGgaCG-UGGGGCCCua----GCCgA- -5'
31016 5' -64.3 NC_006560.1 + 10250 0.72 0.231116
Target:  5'- cGCGGGUCgcgGCgGCCCCGGccUCGGCUc -3'
miRNA:   3'- cUGCCCGGa--CG-UGGGGCCcuAGCCGA- -5'
31016 5' -64.3 NC_006560.1 + 10485 0.68 0.423617
Target:  5'- --gGGGCCcgggGCggggGCCCCGucGGGUCGGCc -3'
miRNA:   3'- cugCCCGGa---CG----UGGGGC--CCUAGCCGa -5'
31016 5' -64.3 NC_006560.1 + 11133 0.72 0.231116
Target:  5'- aGCGGGCgUcgaGgGCCCCGGGG-CGGCg -3'
miRNA:   3'- cUGCCCGgA---CgUGGGGCCCUaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 12331 0.68 0.407027
Target:  5'- --gGGGaCCggagGCACCUCGGGGcUGGCg -3'
miRNA:   3'- cugCCC-GGa---CGUGGGGCCCUaGCCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.