miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31017 3' -55.7 NC_006560.1 + 111327 1.12 0.001725
Target:  5'- cCAUGCAGCGCUACCUGGACAACGGGCg -3'
miRNA:   3'- -GUACGUCGCGAUGGACCUGUUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 97275 0.8 0.230683
Target:  5'- gGUGCAGUaCUACCUGG-CcACGGGCg -3'
miRNA:   3'- gUACGUCGcGAUGGACCuGuUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 117465 0.8 0.230683
Target:  5'- aCGUGCGGCGCgaGCCcGGGCGucCGGGCu -3'
miRNA:   3'- -GUACGUCGCGa-UGGaCCUGUu-GCCCG- -5'
31017 3' -55.7 NC_006560.1 + 129027 0.78 0.279825
Target:  5'- --cGCGGCGCgcACCUGGACGcccucCGGGCc -3'
miRNA:   3'- guaCGUCGCGa-UGGACCUGUu----GCCCG- -5'
31017 3' -55.7 NC_006560.1 + 118020 0.78 0.286522
Target:  5'- --cGCGGCGC-ACCUGG-CGGCGGGg -3'
miRNA:   3'- guaCGUCGCGaUGGACCuGUUGCCCg -5'
31017 3' -55.7 NC_006560.1 + 132106 0.78 0.293345
Target:  5'- uGUGCGGCGg-GCC-GGACGGCGGGUc -3'
miRNA:   3'- gUACGUCGCgaUGGaCCUGUUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 115072 0.78 0.307369
Target:  5'- -cUGCAGCGCUGCgaGGGC--CGGGUg -3'
miRNA:   3'- guACGUCGCGAUGgaCCUGuuGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 77218 0.77 0.35248
Target:  5'- gAUGguGCGCUGCCgGGGCGAggcguaccugaGGGCg -3'
miRNA:   3'- gUACguCGCGAUGGaCCUGUUg----------CCCG- -5'
31017 3' -55.7 NC_006560.1 + 5087 0.77 0.36044
Target:  5'- gCGUGCGGCGCgccGCCcgGGGuCGGCGGGg -3'
miRNA:   3'- -GUACGUCGCGa--UGGa-CCU-GUUGCCCg -5'
31017 3' -55.7 NC_006560.1 + 114009 0.76 0.40036
Target:  5'- --cGCAGcCGCgcggaaacguggACCUGGGCGugGGGUa -3'
miRNA:   3'- guaCGUC-GCGa-----------UGGACCUGUugCCCG- -5'
31017 3' -55.7 NC_006560.1 + 32825 0.75 0.419576
Target:  5'- aCAUG-GGCGCUcaggGCCacgcGGGCGGCGGGCa -3'
miRNA:   3'- -GUACgUCGCGA----UGGa---CCUGUUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 110927 0.75 0.437521
Target:  5'- -uUGguGCGCUuCCUGGAgcuCGGGCu -3'
miRNA:   3'- guACguCGCGAuGGACCUguuGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 72963 0.75 0.437521
Target:  5'- -cUGCucGGcCGCUACCcGGAC-ACGGGCg -3'
miRNA:   3'- guACG--UC-GCGAUGGaCCUGuUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 20898 0.75 0.455899
Target:  5'- --cGCGGCGUU-CCcGGGCggUGGGCg -3'
miRNA:   3'- guaCGUCGCGAuGGaCCUGuuGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 54628 0.74 0.493849
Target:  5'- --cGCGGCgaGCUGCUUGG-CGACGGcGCg -3'
miRNA:   3'- guaCGUCG--CGAUGGACCuGUUGCC-CG- -5'
31017 3' -55.7 NC_006560.1 + 80854 0.73 0.51336
Target:  5'- --gGCuGCGCgcgGgCUGGGCGGCGGGg -3'
miRNA:   3'- guaCGuCGCGa--UgGACCUGUUGCCCg -5'
31017 3' -55.7 NC_006560.1 + 5145 0.73 0.51336
Target:  5'- --cGCGGCGCgggGCCcGGGCcggggccgcgggGGCGGGCc -3'
miRNA:   3'- guaCGUCGCGa--UGGaCCUG------------UUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 18939 0.73 0.51336
Target:  5'- gCGUGCcGCGCgggGCCcggcGGGCGcCGGGCg -3'
miRNA:   3'- -GUACGuCGCGa--UGGa---CCUGUuGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 150018 0.73 0.51336
Target:  5'- --gGCGGCGC-ACCccgaccGACGGCGGGCg -3'
miRNA:   3'- guaCGUCGCGaUGGac----CUGUUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 84694 0.73 0.51336
Target:  5'- -cUGCGGCGC-----GGGCGACGGGCg -3'
miRNA:   3'- guACGUCGCGauggaCCUGUUGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.