miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31017 3' -55.7 NC_006560.1 + 771 0.7 0.736936
Target:  5'- --cGCGGCGCggguccuuUCUGGGCcuCGGGUu -3'
miRNA:   3'- guaCGUCGCGau------GGACCUGuuGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 2168 0.69 0.756454
Target:  5'- --cGCAGCGCggcggGCa-GGGCcuCGGGCc -3'
miRNA:   3'- guaCGUCGCGa----UGgaCCUGuuGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 2341 0.69 0.784869
Target:  5'- gUcgGCGGCGCgGCCgucGAgcGCGGGCa -3'
miRNA:   3'- -GuaCGUCGCGaUGGac-CUguUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 2589 0.67 0.853869
Target:  5'- --aGCGGaCGUcGCaCUGcGCGGCGGGCa -3'
miRNA:   3'- guaCGUC-GCGaUG-GACcUGUUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 2640 0.68 0.820761
Target:  5'- --gGCGGCGCgc----GACGACGGGCc -3'
miRNA:   3'- guaCGUCGCGauggacCUGUUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 3144 0.69 0.746746
Target:  5'- --cGCGGCGC-GCCaGGGCucggggaagAGCGGGUg -3'
miRNA:   3'- guaCGUCGCGaUGGaCCUG---------UUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 3238 0.68 0.82932
Target:  5'- --gGCGGCGUgugggcggGCCcGGGCGGCGcgcGGCg -3'
miRNA:   3'- guaCGUCGCGa-------UGGaCCUGUUGC---CCG- -5'
31017 3' -55.7 NC_006560.1 + 3312 0.7 0.717047
Target:  5'- gGUG-AGCGCcgcggGCCggGGGCGcggGCGGGCg -3'
miRNA:   3'- gUACgUCGCGa----UGGa-CCUGU---UGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 3409 0.68 0.794074
Target:  5'- -uUGC-GCGCcgGCgggcGGGCGGCGGGCg -3'
miRNA:   3'- guACGuCGCGa-UGga--CCUGUUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 3458 0.68 0.80313
Target:  5'- --aGCucuuGCGCUugC-GGGCcgcGCGGGCg -3'
miRNA:   3'- guaCGu---CGCGAugGaCCUGu--UGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 3558 0.71 0.673382
Target:  5'- --gGCGGCGCcgacggagcgcaccUGCCgcGGGCuGCGGGCc -3'
miRNA:   3'- guaCGUCGCG--------------AUGGa-CCUGuUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 3765 0.67 0.845881
Target:  5'- --gGCGGCGCcGCgCggcgGGACcGCGGcGCg -3'
miRNA:   3'- guaCGUCGCGaUG-Ga---CCUGuUGCC-CG- -5'
31017 3' -55.7 NC_006560.1 + 3974 0.66 0.8973
Target:  5'- --gGCGGCGCUGCgCgGcGACAcgcccGCGGcGCc -3'
miRNA:   3'- guaCGUCGCGAUG-GaC-CUGU-----UGCC-CG- -5'
31017 3' -55.7 NC_006560.1 + 4031 0.7 0.706987
Target:  5'- --gGCGGCGUc-CCgGGGCGGCGGcGCg -3'
miRNA:   3'- guaCGUCGCGauGGaCCUGUUGCC-CG- -5'
31017 3' -55.7 NC_006560.1 + 4409 0.69 0.775525
Target:  5'- --cGCGGCGUcGCCcagcucGGGCGcccacACGGGCg -3'
miRNA:   3'- guaCGUCGCGaUGGa-----CCUGU-----UGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 5087 0.77 0.36044
Target:  5'- gCGUGCGGCGCgccGCCcgGGGuCGGCGGGg -3'
miRNA:   3'- -GUACGUCGCGa--UGGa-CCU-GUUGCCCg -5'
31017 3' -55.7 NC_006560.1 + 5145 0.73 0.51336
Target:  5'- --cGCGGCGCgggGCCcGGGCcggggccgcgggGGCGGGCc -3'
miRNA:   3'- guaCGUCGCGa--UGGaCCUG------------UUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 8530 0.68 0.812029
Target:  5'- --aGgAGCGCUGCgCguggUGGGgGugGGGCg -3'
miRNA:   3'- guaCgUCGCGAUG-G----ACCUgUugCCCG- -5'
31017 3' -55.7 NC_006560.1 + 9924 0.67 0.866976
Target:  5'- -cUGCcaGGCGCUccguccagacgcuuGCCgcgcacgGGGCGucgGCGGGCg -3'
miRNA:   3'- guACG--UCGCGA--------------UGGa------CCUGU---UGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 10183 0.71 0.666195
Target:  5'- cCGUGCAcguGCGCcACCUcGGCGAUGGGg -3'
miRNA:   3'- -GUACGU---CGCGaUGGAcCUGUUGCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.