miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31017 5' -65.9 NC_006560.1 + 13370 0.68 0.337248
Target:  5'- aGCGCGCGcccGG-CCGGGCCGC-CUcGGg -3'
miRNA:   3'- -UGCGCGCa--CCgGGCCCGGUGcGA-CCa -5'
31017 5' -65.9 NC_006560.1 + 13617 0.68 0.366685
Target:  5'- uCGCGCcagGGCCCGGuccgccGCCACGUaGGc -3'
miRNA:   3'- uGCGCGca-CCGGGCC------CGGUGCGaCCa -5'
31017 5' -65.9 NC_006560.1 + 14611 0.67 0.4223
Target:  5'- cGCGCuugGCGcGGCCCucGGGCC-CGCgGGc -3'
miRNA:   3'- -UGCG---CGCaCCGGG--CCCGGuGCGaCCa -5'
31017 5' -65.9 NC_006560.1 + 15294 0.66 0.447638
Target:  5'- gGCGCGgcggcgGUGGCCuCGGGCgcccccucCGCGCcGGUc -3'
miRNA:   3'- -UGCGCg-----CACCGG-GCCCG--------GUGCGaCCA- -5'
31017 5' -65.9 NC_006560.1 + 15446 0.71 0.211269
Target:  5'- gGCGCGCGUucgcgccGCCCGGGCCAgGggcucguccucCUGGg -3'
miRNA:   3'- -UGCGCGCAc------CGGGCCCGGUgC-----------GACCa -5'
31017 5' -65.9 NC_006560.1 + 15754 0.68 0.340113
Target:  5'- cGCGCGCGUccgggggcgacuccgGGCCCggGGGCCG-GCaGGg -3'
miRNA:   3'- -UGCGCGCA---------------CCGGG--CCCGGUgCGaCCa -5'
31017 5' -65.9 NC_006560.1 + 15921 0.69 0.283656
Target:  5'- -aGgGCGUGGCCCguugggggGGaGCCGCcCUGGUa -3'
miRNA:   3'- ugCgCGCACCGGG--------CC-CGGUGcGACCA- -5'
31017 5' -65.9 NC_006560.1 + 16301 0.66 0.45627
Target:  5'- -gGCGCGgcggGGCgCGGGCC-CGCg--- -3'
miRNA:   3'- ugCGCGCa---CCGgGCCCGGuGCGacca -5'
31017 5' -65.9 NC_006560.1 + 16396 0.66 0.430651
Target:  5'- gGCGgGCGUcGCCUGGaGCCGCGgUGc- -3'
miRNA:   3'- -UGCgCGCAcCGGGCC-CGGUGCgACca -5'
31017 5' -65.9 NC_006560.1 + 18337 0.67 0.374315
Target:  5'- uGCGCGCGgccgaccugcGGCgCGuGGCCGCGCcccugaUGGa -3'
miRNA:   3'- -UGCGCGCa---------CCGgGC-CCGGUGCG------ACCa -5'
31017 5' -65.9 NC_006560.1 + 18944 0.68 0.359162
Target:  5'- cCGCGCGgGGCCCGGcgggcGCCGgGCgucgcGGg -3'
miRNA:   3'- uGCGCGCaCCGGGCC-----CGGUgCGa----CCa -5'
31017 5' -65.9 NC_006560.1 + 22687 0.67 0.374315
Target:  5'- cGCGCGCcgccGUGGCCgGGcGCgACGCcacGGg -3'
miRNA:   3'- -UGCGCG----CACCGGgCC-CGgUGCGa--CCa -5'
31017 5' -65.9 NC_006560.1 + 23154 0.69 0.323188
Target:  5'- cGCGCGcCGUGccgcaCCUGGGCUACGCcaUGGc -3'
miRNA:   3'- -UGCGC-GCACc----GGGCCCGGUGCG--ACCa -5'
31017 5' -65.9 NC_006560.1 + 24126 0.69 0.28997
Target:  5'- cCGCGCGccGCCCGGGCC-CGCc--- -3'
miRNA:   3'- uGCGCGCacCGGGCCCGGuGCGacca -5'
31017 5' -65.9 NC_006560.1 + 24266 0.73 0.175078
Target:  5'- cGCGCGCGcUGGCCuCGcuGGCCGCGCgcugcGGc -3'
miRNA:   3'- -UGCGCGC-ACCGG-GC--CCGGUGCGa----CCa -5'
31017 5' -65.9 NC_006560.1 + 24483 0.69 0.325965
Target:  5'- cGCGCGCGgcGGCCUcuccuuccugcucGCCGCGCUGGc -3'
miRNA:   3'- -UGCGCGCa-CCGGGcc-----------CGGUGCGACCa -5'
31017 5' -65.9 NC_006560.1 + 25128 0.71 0.242487
Target:  5'- uGCGCGCGcuggGGCCUGGGUgCGcCGCUGcGg -3'
miRNA:   3'- -UGCGCGCa---CCGGGCCCG-GU-GCGAC-Ca -5'
31017 5' -65.9 NC_006560.1 + 25190 0.74 0.137672
Target:  5'- cGCGCGCGccgGGCCCGaGGCCcugcccgccGCGCUGc- -3'
miRNA:   3'- -UGCGCGCa--CCGGGC-CCGG---------UGCGACca -5'
31017 5' -65.9 NC_006560.1 + 25326 0.66 0.430651
Target:  5'- cGCGUGCGcUGGgCCGccGGCCGCGCcGa- -3'
miRNA:   3'- -UGCGCGC-ACCgGGC--CCGGUGCGaCca -5'
31017 5' -65.9 NC_006560.1 + 25841 0.7 0.271357
Target:  5'- gACG-GCGUGG-CCGGGCgCGCGCccgGGg -3'
miRNA:   3'- -UGCgCGCACCgGGCCCG-GUGCGa--CCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.