miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31017 5' -65.9 NC_006560.1 + 207 0.7 0.264185
Target:  5'- cGCGCGCGccgccgcgggagGGCCCGGcCCGCgGCUcGGUg -3'
miRNA:   3'- -UGCGCGCa-----------CCGGGCCcGGUG-CGA-CCA- -5'
31017 5' -65.9 NC_006560.1 + 1514 0.7 0.265369
Target:  5'- aGCGCGUGcaucgGGcCCCGGGCgCGCGCccGGc -3'
miRNA:   3'- -UGCGCGCa----CC-GGGCCCG-GUGCGa-CCa -5'
31017 5' -65.9 NC_006560.1 + 2171 0.68 0.337248
Target:  5'- aGCGCgGCGggcagGGCCuCGGGCCcgGCGCgcgcGGc -3'
miRNA:   3'- -UGCG-CGCa----CCGG-GCCCGG--UGCGa---CCa -5'
31017 5' -65.9 NC_006560.1 + 2643 0.66 0.430651
Target:  5'- gGCGCGCGacgacgGGCCCgucggcGGGCCACucCUcGGg -3'
miRNA:   3'- -UGCGCGCa-----CCGGG------CCCGGUGc-GA-CCa -5'
31017 5' -65.9 NC_006560.1 + 3241 0.76 0.107733
Target:  5'- gGCGUGUGggcgGGCCCGGGCgGCGCgcGGc -3'
miRNA:   3'- -UGCGCGCa---CCGGGCCCGgUGCGa-CCa -5'
31017 5' -65.9 NC_006560.1 + 3379 0.66 0.473798
Target:  5'- gGCGgGCGggcgGGCgCGGGCCggcucuucuugcGCGCcGGc -3'
miRNA:   3'- -UGCgCGCa---CCGgGCCCGG------------UGCGaCCa -5'
31017 5' -65.9 NC_006560.1 + 3422 0.66 0.464991
Target:  5'- gGCGgGCGgcgGGCgCGGGCgCcCGCgGGg -3'
miRNA:   3'- -UGCgCGCa--CCGgGCCCG-GuGCGaCCa -5'
31017 5' -65.9 NC_006560.1 + 3741 0.69 0.312258
Target:  5'- gGCGCGCG-GGCgCGGcgcgggcgcggcggcGCCGCGCggcgGGa -3'
miRNA:   3'- -UGCGCGCaCCGgGCC---------------CGGUGCGa---CCa -5'
31017 5' -65.9 NC_006560.1 + 3791 0.66 0.482687
Target:  5'- cGCGCGCGgccgccaGCCCGGGCacgGCgGCgaGGUc -3'
miRNA:   3'- -UGCGCGCac-----CGGGCCCGg--UG-CGa-CCA- -5'
31017 5' -65.9 NC_006560.1 + 4538 0.67 0.395448
Target:  5'- cACGCGCcccgGGggcgggggcucggcCCCGGGCCAgggcucgcCGCUGGc -3'
miRNA:   3'- -UGCGCGca--CC--------------GGGCCCGGU--------GCGACCa -5'
31017 5' -65.9 NC_006560.1 + 4603 0.66 0.439098
Target:  5'- aGCGCGCGUagaagGcGCCCGaGGCCuCGUcGGc -3'
miRNA:   3'- -UGCGCGCA-----C-CGGGC-CCGGuGCGaCCa -5'
31017 5' -65.9 NC_006560.1 + 5148 0.76 0.095161
Target:  5'- -gGCGCGgGGCCCGGGCCGgggcCGCgGGg -3'
miRNA:   3'- ugCGCGCaCCGGGCCCGGU----GCGaCCa -5'
31017 5' -65.9 NC_006560.1 + 7557 0.67 0.411591
Target:  5'- -aGCGCGaGGCUCGGGCCccgggccgccauucGCGCUcGa -3'
miRNA:   3'- ugCGCGCaCCGGGCCCGG--------------UGCGAcCa -5'
31017 5' -65.9 NC_006560.1 + 8886 0.69 0.302926
Target:  5'- -gGCGgGgGGCUucgcgCGGGCCACGCgUGGUc -3'
miRNA:   3'- ugCGCgCaCCGG-----GCCCGGUGCG-ACCA- -5'
31017 5' -65.9 NC_006560.1 + 9115 0.66 0.465868
Target:  5'- gGCGCGCGgcacgucauugcgagGGCCCGcaggucuucGGCgACGCcgaUGGg -3'
miRNA:   3'- -UGCGCGCa--------------CCGGGC---------CCGgUGCG---ACCa -5'
31017 5' -65.9 NC_006560.1 + 9608 0.73 0.175078
Target:  5'- aGCGCGgGgcgcGGCCCcugGGGCCGCGCcgaaggGGUg -3'
miRNA:   3'- -UGCGCgCa---CCGGG---CCCGGUGCGa-----CCA- -5'
31017 5' -65.9 NC_006560.1 + 9967 0.66 0.447638
Target:  5'- gGCGgGCGagcGGCCuCGGGCagcCGCgGGUg -3'
miRNA:   3'- -UGCgCGCa--CCGG-GCCCGgu-GCGaCCA- -5'
31017 5' -65.9 NC_006560.1 + 11133 0.67 0.414047
Target:  5'- aGCGgGCGUcgagGGCCCcgGGGCgGCGC-GGc -3'
miRNA:   3'- -UGCgCGCA----CCGGG--CCCGgUGCGaCCa -5'
31017 5' -65.9 NC_006560.1 + 11739 0.66 0.464991
Target:  5'- -gGCGCGgGGCCCGcaGCgGCGCguccgGGUc -3'
miRNA:   3'- ugCGCGCaCCGGGCc-CGgUGCGa----CCA- -5'
31017 5' -65.9 NC_006560.1 + 12540 0.67 0.374315
Target:  5'- -aGgGCGUGuCCCGGcGCCGCGCcgucgGGg -3'
miRNA:   3'- ugCgCGCACcGGGCC-CGGUGCGa----CCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.