miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31017 5' -65.9 NC_006560.1 + 111361 1.06 0.000589
Target:  5'- cACGCGCGUGGCCCGGGCCACGCUGGUg -3'
miRNA:   3'- -UGCGCGCACCGGGCCCGGUGCGACCA- -5'
31017 5' -65.9 NC_006560.1 + 131413 0.83 0.029531
Target:  5'- gACGCGCGccccugGGCCCGGGCCgucgcgGCGCUGGc -3'
miRNA:   3'- -UGCGCGCa-----CCGGGCCCGG------UGCGACCa -5'
31017 5' -65.9 NC_006560.1 + 5148 0.76 0.095161
Target:  5'- -gGCGCGgGGCCCGGGCCGgggcCGCgGGg -3'
miRNA:   3'- ugCGCGCaCCGGGCCCGGU----GCGaCCa -5'
31017 5' -65.9 NC_006560.1 + 3241 0.76 0.107733
Target:  5'- gGCGUGUGggcgGGCCCGGGCgGCGCgcGGc -3'
miRNA:   3'- -UGCGCGCa---CCGGGCCCGgUGCGa-CCa -5'
31017 5' -65.9 NC_006560.1 + 74494 0.75 0.121851
Target:  5'- cGCGCGCGccgaggcGGCCCGGGCCGC-CcGGa -3'
miRNA:   3'- -UGCGCGCa------CCGGGCCCGGUGcGaCCa -5'
31017 5' -65.9 NC_006560.1 + 53569 0.74 0.131129
Target:  5'- uGCGCGCGUcGcGCCCGGGCgcaGCGCgcccgGGa -3'
miRNA:   3'- -UGCGCGCA-C-CGGGCCCGg--UGCGa----CCa -5'
31017 5' -65.9 NC_006560.1 + 25190 0.74 0.137672
Target:  5'- cGCGCGCGccgGGCCCGaGGCCcugcccgccGCGCUGc- -3'
miRNA:   3'- -UGCGCGCa--CCGGGC-CCGG---------UGCGACca -5'
31017 5' -65.9 NC_006560.1 + 136024 0.73 0.155359
Target:  5'- -gGgGCGaguuccgGGCCCuGGCCGCGCUGGa -3'
miRNA:   3'- ugCgCGCa------CCGGGcCCGGUGCGACCa -5'
31017 5' -65.9 NC_006560.1 + 149966 0.73 0.162993
Target:  5'- cGCGCGCGUgucggaucgGGUCCgcgcuaccgGGGCCGCGCUcGGg -3'
miRNA:   3'- -UGCGCGCA---------CCGGG---------CCCGGUGCGA-CCa -5'
31017 5' -65.9 NC_006560.1 + 107459 0.73 0.169746
Target:  5'- uCGCGacCGUcGGCCCGGGggcgcucgccgccuCCGCGCUGGg -3'
miRNA:   3'- uGCGC--GCA-CCGGGCCC--------------GGUGCGACCa -5'
31017 5' -65.9 NC_006560.1 + 53374 0.73 0.170964
Target:  5'- aGCGUcaagGCGUGGUUCGaGGCgGCGCUGGc -3'
miRNA:   3'- -UGCG----CGCACCGGGC-CCGgUGCGACCa -5'
31017 5' -65.9 NC_006560.1 + 140019 0.73 0.170964
Target:  5'- aACGCGaggcCGUGGgCCuGGCCGgGCUGGUg -3'
miRNA:   3'- -UGCGC----GCACCgGGcCCGGUgCGACCA- -5'
31017 5' -65.9 NC_006560.1 + 9608 0.73 0.175078
Target:  5'- aGCGCGgGgcgcGGCCCcugGGGCCGCGCcgaaggGGUg -3'
miRNA:   3'- -UGCGCgCa---CCGGG---CCCGGUGCGa-----CCA- -5'
31017 5' -65.9 NC_006560.1 + 24266 0.73 0.175078
Target:  5'- cGCGCGCGcUGGCCuCGcuGGCCGCGCgcugcGGc -3'
miRNA:   3'- -UGCGCGC-ACCGG-GC--CCGGUGCGa----CCa -5'
31017 5' -65.9 NC_006560.1 + 75234 0.73 0.175078
Target:  5'- gGCGCGCGcgGGCCU-GGCCGCGUgcgagGGg -3'
miRNA:   3'- -UGCGCGCa-CCGGGcCCGGUGCGa----CCa -5'
31017 5' -65.9 NC_006560.1 + 35365 0.72 0.179281
Target:  5'- cGCGCGCGgGGCCC-GGCUGCGCcacagGGg -3'
miRNA:   3'- -UGCGCGCaCCGGGcCCGGUGCGa----CCa -5'
31017 5' -65.9 NC_006560.1 + 106938 0.72 0.183573
Target:  5'- aAUGgGCGUGGCCUcGGCacucaCGCGCUGGg -3'
miRNA:   3'- -UGCgCGCACCGGGcCCG-----GUGCGACCa -5'
31017 5' -65.9 NC_006560.1 + 32717 0.72 0.196996
Target:  5'- gGCGCGCG-GGCCCGGGguCCGuCGggGGg -3'
miRNA:   3'- -UGCGCGCaCCGGGCCC--GGU-GCgaCCa -5'
31017 5' -65.9 NC_006560.1 + 103036 0.72 0.196996
Target:  5'- gACGCGCGgGGCgCGGGCgGcCGCUcGGg -3'
miRNA:   3'- -UGCGCGCaCCGgGCCCGgU-GCGA-CCa -5'
31017 5' -65.9 NC_006560.1 + 56380 0.72 0.200249
Target:  5'- cGCGCGCGgGGCCgGGGaggguacgguugccCCGCGCgGGg -3'
miRNA:   3'- -UGCGCGCaCCGGgCCC--------------GGUGCGaCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.