miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31018 3' -62.4 NC_006560.1 + 111030 1.13 0.000505
Target:  5'- aGCCCCUCAUCGCCCGGGACGGACCGCa -3'
miRNA:   3'- -CGGGGAGUAGCGGGCCCUGCCUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 121912 0.82 0.073575
Target:  5'- cGUCCC-CcgCGCCCcgcGGGAUGGACCGCg -3'
miRNA:   3'- -CGGGGaGuaGCGGG---CCCUGCCUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 10476 0.81 0.094611
Target:  5'- cGCCgCCUCGggGCCCGGGGCGGGggccCCGUc -3'
miRNA:   3'- -CGG-GGAGUagCGGGCCCUGCCU----GGCG- -5'
31018 3' -62.4 NC_006560.1 + 73576 0.8 0.107159
Target:  5'- aGgCCCUCGcgggguUCGCCCGGGGCgaggaggcccGGGCCGCc -3'
miRNA:   3'- -CgGGGAGU------AGCGGGCCCUG----------CCUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 99748 0.78 0.140442
Target:  5'- gGCCCCgaCGaCGCCCGGGugGGggggcgcguacGCCGCc -3'
miRNA:   3'- -CGGGGa-GUaGCGGGCCCugCC-----------UGGCG- -5'
31018 3' -62.4 NC_006560.1 + 21711 0.77 0.158515
Target:  5'- cGCCCC-CG-CGcCCCGGGGCGGAgCCGg -3'
miRNA:   3'- -CGGGGaGUaGC-GGGCCCUGCCU-GGCg -5'
31018 3' -62.4 NC_006560.1 + 74862 0.77 0.158515
Target:  5'- cGCCCCUCgaGUCGCCCGGGcCGucuCCGa -3'
miRNA:   3'- -CGGGGAG--UAGCGGGCCCuGCcu-GGCg -5'
31018 3' -62.4 NC_006560.1 + 73709 0.77 0.162373
Target:  5'- gGCCCC-CGaggCGCCCGGGG-GGACCGa -3'
miRNA:   3'- -CGGGGaGUa--GCGGGCCCUgCCUGGCg -5'
31018 3' -62.4 NC_006560.1 + 110305 0.77 0.170344
Target:  5'- cGgCCCUCGUCGCCCuguuGGCGG-CCGCg -3'
miRNA:   3'- -CgGGGAGUAGCGGGcc--CUGCCuGGCG- -5'
31018 3' -62.4 NC_006560.1 + 122640 0.77 0.170344
Target:  5'- cGCCCCUgCG--GCCCGcGGGgGGGCCGCu -3'
miRNA:   3'- -CGGGGA-GUagCGGGC-CCUgCCUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 70431 0.77 0.170344
Target:  5'- cGCgCCCUCAcggcCGCCCuggcGGGccuGCGGGCCGCg -3'
miRNA:   3'- -CG-GGGAGUa---GCGGG----CCC---UGCCUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 67869 0.77 0.170344
Target:  5'- cGCCCC-CAgaggaCGUCCGGGugGcGCCGCg -3'
miRNA:   3'- -CGGGGaGUa----GCGGGCCCugCcUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 10263 0.77 0.170344
Target:  5'- gGCCCCggccUCGgcuccCGCCCccuccgcgagagGGGGCGGGCCGCc -3'
miRNA:   3'- -CGGGG----AGUa----GCGGG------------CCCUGCCUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 6350 0.76 0.178662
Target:  5'- cGCCCCggccCGCCCuucGGGGCGGGCCcGCc -3'
miRNA:   3'- -CGGGGaguaGCGGG---CCCUGCCUGG-CG- -5'
31018 3' -62.4 NC_006560.1 + 107535 0.76 0.187339
Target:  5'- gGCCCg-CGUCGCCC-GGACGGGCCu- -3'
miRNA:   3'- -CGGGgaGUAGCGGGcCCUGCCUGGcg -5'
31018 3' -62.4 NC_006560.1 + 133674 0.76 0.191816
Target:  5'- gGCCCggugaUgAgcgCGCCCGGGAUGGGCgCGCg -3'
miRNA:   3'- -CGGGg----AgUa--GCGGGCCCUGCCUG-GCG- -5'
31018 3' -62.4 NC_006560.1 + 90438 0.76 0.196386
Target:  5'- cGCCCCgggCAagGCCCccaagggggggcGGGACGGcgggGCCGCa -3'
miRNA:   3'- -CGGGGa--GUagCGGG------------CCCUGCC----UGGCG- -5'
31018 3' -62.4 NC_006560.1 + 100015 0.76 0.196386
Target:  5'- cGCCCUUUAUa-CCCGcGGuCGGGCCGCg -3'
miRNA:   3'- -CGGGGAGUAgcGGGC-CCuGCCUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 94329 0.76 0.196386
Target:  5'- cGCgaC-CGUCGCCCGGcggcuGGCGGACCGCa -3'
miRNA:   3'- -CGggGaGUAGCGGGCC-----CUGCCUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 3920 0.76 0.20105
Target:  5'- cCCCCUCcucCGCCgCgGGGGCGGcGCCGCg -3'
miRNA:   3'- cGGGGAGua-GCGG-G-CCCUGCC-UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.