miRNA display CGI


Results 1 - 20 of 386 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31018 3' -62.4 NC_006560.1 + 490 0.67 0.611293
Target:  5'- gGCCCC-CGUCGgucucgcucuCCCgccacgggcgccggGGGGCGGcggccgGCCGCg -3'
miRNA:   3'- -CGGGGaGUAGC----------GGG--------------CCCUGCC------UGGCG- -5'
31018 3' -62.4 NC_006560.1 + 596 0.72 0.351413
Target:  5'- gGCUCCUCcgCGCCgCGGGcacGCGGGuucgaaUCGCa -3'
miRNA:   3'- -CGGGGAGuaGCGG-GCCC---UGCCU------GGCG- -5'
31018 3' -62.4 NC_006560.1 + 667 0.68 0.547236
Target:  5'- aCCCCggcgCGCCCGcGGcGCGGGCuCGUc -3'
miRNA:   3'- cGGGGaguaGCGGGC-CC-UGCCUG-GCG- -5'
31018 3' -62.4 NC_006560.1 + 878 0.71 0.366391
Target:  5'- cCCCCUCGcgCGCCCgccccccgccGGGGCcgccGGCCGCu -3'
miRNA:   3'- cGGGGAGUa-GCGGG----------CCCUGc---CUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 992 0.74 0.258952
Target:  5'- cGCCCCUCGcccCGgCCGGGGCGccgucuCCGCc -3'
miRNA:   3'- -CGGGGAGUa--GCgGGCCCUGCcu----GGCG- -5'
31018 3' -62.4 NC_006560.1 + 1155 0.7 0.422172
Target:  5'- gGUUCCUgG-CGgCCGGGuucucuGCGGACCGCu -3'
miRNA:   3'- -CGGGGAgUaGCgGGCCC------UGCCUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 1228 0.67 0.627717
Target:  5'- gGCCCCUgCcgCGCCCccacgcagccccggcGGGGCcc-CCGCg -3'
miRNA:   3'- -CGGGGA-GuaGCGGG---------------CCCUGccuGGCG- -5'
31018 3' -62.4 NC_006560.1 + 1283 0.67 0.614189
Target:  5'- aGCCCC-CGcCGCgCCGGGccgccCGGGuuCCGCc -3'
miRNA:   3'- -CGGGGaGUaGCG-GGCCCu----GCCU--GGCG- -5'
31018 3' -62.4 NC_006560.1 + 1330 0.72 0.351413
Target:  5'- aGCCCC-CGggCGCCCgacGGGACcGugCGCg -3'
miRNA:   3'- -CGGGGaGUa-GCGGG---CCCUGcCugGCG- -5'
31018 3' -62.4 NC_006560.1 + 1963 0.68 0.545351
Target:  5'- cGCCCCccagggcgggggCGggGCUCGGGGcCGGGCCaGCu -3'
miRNA:   3'- -CGGGGa-----------GUagCGGGCCCU-GCCUGG-CG- -5'
31018 3' -62.4 NC_006560.1 + 2180 0.66 0.662483
Target:  5'- gGCagggCCUCGg-GCCCGGcGcGCGcGGCCGCg -3'
miRNA:   3'- -CGg---GGAGUagCGGGCC-C-UGC-CUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 2320 0.67 0.604541
Target:  5'- gGCCgCCUCG-CGCgCGGGcgagucggcgGCGcGGCCGUc -3'
miRNA:   3'- -CGG-GGAGUaGCGgGCCC----------UGC-CUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 3061 0.69 0.500836
Target:  5'- gGCCCgagggcgCGgccggaGCCCGgcucGGGCGGGCCGCa -3'
miRNA:   3'- -CGGGga-----GUag----CGGGC----CCUGCCUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 3401 0.71 0.358847
Target:  5'- gGCUCUUCuugcgCGCCgGcGGGCGGGCgGCg -3'
miRNA:   3'- -CGGGGAGua---GCGGgC-CCUGCCUGgCG- -5'
31018 3' -62.4 NC_006560.1 + 3654 0.68 0.519205
Target:  5'- gGCCUCggCGcCGCCgGGGACGcGgaggucGCCGCg -3'
miRNA:   3'- -CGGGGa-GUaGCGGgCCCUGC-C------UGGCG- -5'
31018 3' -62.4 NC_006560.1 + 3920 0.76 0.20105
Target:  5'- cCCCCUCcucCGCCgCgGGGGCGGcGCCGCg -3'
miRNA:   3'- cGGGGAGua-GCGG-G-CCCUGCC-UGGCG- -5'
31018 3' -62.4 NC_006560.1 + 4417 0.69 0.465003
Target:  5'- cGCCCagCUCGggCGCCCacacGGGcGCGGGCgCGCc -3'
miRNA:   3'- -CGGG--GAGUa-GCGGG----CCC-UGCCUG-GCG- -5'
31018 3' -62.4 NC_006560.1 + 4481 0.67 0.575728
Target:  5'- cGCCaCCUCGggcgCGCCCcagagccccGGGCGGcugucgcccagGCCGCc -3'
miRNA:   3'- -CGG-GGAGUa---GCGGGc--------CCUGCC-----------UGGCG- -5'
31018 3' -62.4 NC_006560.1 + 4625 0.74 0.258952
Target:  5'- gGCCUCgUCggCGUCCaGGGgcACGGGCCGCg -3'
miRNA:   3'- -CGGGG-AGuaGCGGG-CCC--UGCCUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 5155 0.71 0.374043
Target:  5'- gGCCCgggcCGggGCCgCgGGGGCGGGCCGCg -3'
miRNA:   3'- -CGGGga--GUagCGG-G-CCCUGCCUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.