miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31018 5' -52 NC_006560.1 + 63863 0.69 0.907171
Target:  5'- cAGCAcGCCCucAUCCGCAGCacggcCAUGAUg -3'
miRNA:   3'- cUCGU-CGGG--UAGGUGUUGau---GUACUG- -5'
31018 5' -52 NC_006560.1 + 64615 0.72 0.774985
Target:  5'- cAGCGGCUUgaacuuGUUCAcCAGCUGCGUGACg -3'
miRNA:   3'- cUCGUCGGG------UAGGU-GUUGAUGUACUG- -5'
31018 5' -52 NC_006560.1 + 64689 0.67 0.958441
Target:  5'- uGGGCGGCaCGUCCACGA--ACAUGcGCu -3'
miRNA:   3'- -CUCGUCGgGUAGGUGUUgaUGUAC-UG- -5'
31018 5' -52 NC_006560.1 + 68182 0.7 0.871891
Target:  5'- cGGCGcGCCCAUCCGCGug-GCG-GACg -3'
miRNA:   3'- cUCGU-CGGGUAGGUGUugaUGUaCUG- -5'
31018 5' -52 NC_006560.1 + 70049 0.67 0.958441
Target:  5'- uGAGCAGCUgcUCCGCgAGCUGCAc--- -3'
miRNA:   3'- -CUCGUCGGguAGGUG-UUGAUGUacug -5'
31018 5' -52 NC_006560.1 + 75884 0.67 0.96217
Target:  5'- cGGCGuGCCCucccUCCGCcgaUACGUGGCg -3'
miRNA:   3'- cUCGU-CGGGu---AGGUGuugAUGUACUG- -5'
31018 5' -52 NC_006560.1 + 76251 0.66 0.979756
Target:  5'- cAGCAGCgcgCCGaggCCACGgACcGCGUGACg -3'
miRNA:   3'- cUCGUCG---GGUa--GGUGU-UGaUGUACUG- -5'
31018 5' -52 NC_006560.1 + 78348 0.74 0.650634
Target:  5'- cGGCGGCCCGcccgaccCCGCGGCgcGCGUGACg -3'
miRNA:   3'- cUCGUCGGGUa------GGUGUUGa-UGUACUG- -5'
31018 5' -52 NC_006560.1 + 80500 0.68 0.945771
Target:  5'- -cGCGGCCC-UCuCGCGgcGCUACGUG-Cg -3'
miRNA:   3'- cuCGUCGGGuAG-GUGU--UGAUGUACuG- -5'
31018 5' -52 NC_006560.1 + 81438 0.66 0.977359
Target:  5'- gGGGCGGCCCcggUCGCGGCgucggGCGcGGCc -3'
miRNA:   3'- -CUCGUCGGGua-GGUGUUGa----UGUaCUG- -5'
31018 5' -52 NC_006560.1 + 87569 0.66 0.977359
Target:  5'- cGGGCAGCCCccgcgccccgagGUCCugGACgaacGCcucgGGCa -3'
miRNA:   3'- -CUCGUCGGG------------UAGGugUUGa---UGua--CUG- -5'
31018 5' -52 NC_006560.1 + 89616 0.66 0.977359
Target:  5'- --cCAGCCC--CCugGGCUACGUGuACg -3'
miRNA:   3'- cucGUCGGGuaGGugUUGAUGUAC-UG- -5'
31018 5' -52 NC_006560.1 + 96618 0.66 0.976343
Target:  5'- aGAGCacGGCCUuccaCCGCGACgaccacgagucggACAUGGCg -3'
miRNA:   3'- -CUCG--UCGGGua--GGUGUUGa------------UGUACUG- -5'
31018 5' -52 NC_006560.1 + 101813 0.69 0.919505
Target:  5'- gGAGCAGCg---CCGCGACcacgGCGUGGCc -3'
miRNA:   3'- -CUCGUCGgguaGGUGUUGa---UGUACUG- -5'
31018 5' -52 NC_006560.1 + 103262 0.66 0.977359
Target:  5'- -cGCGGCUCAcCCGCAGCgucuucUGCGaGACg -3'
miRNA:   3'- cuCGUCGGGUaGGUGUUG------AUGUaCUG- -5'
31018 5' -52 NC_006560.1 + 111064 1.09 0.005232
Target:  5'- cGAGCAGCCCAUCCACAACUACAUGACc -3'
miRNA:   3'- -CUCGUCGGGUAGGUGUUGAUGUACUG- -5'
31018 5' -52 NC_006560.1 + 118007 0.66 0.971946
Target:  5'- cGGCGGCCgAggCCGCGGC-GCAccUGGCg -3'
miRNA:   3'- cUCGUCGGgUa-GGUGUUGaUGU--ACUG- -5'
31018 5' -52 NC_006560.1 + 118341 0.66 0.974758
Target:  5'- cGGCGGCCC--CCGCGACgACGccggGGCg -3'
miRNA:   3'- cUCGUCGGGuaGGUGUUGaUGUa---CUG- -5'
31018 5' -52 NC_006560.1 + 118819 0.66 0.974758
Target:  5'- -cGCGGCCCGUCCugG-CgcCGUucGACg -3'
miRNA:   3'- cuCGUCGGGUAGGugUuGauGUA--CUG- -5'
31018 5' -52 NC_006560.1 + 121171 0.67 0.94981
Target:  5'- cGAGCAGCa---CCGCGGCgaggaagUACGUGGCg -3'
miRNA:   3'- -CUCGUCGgguaGGUGUUG-------AUGUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.