Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31018 | 5' | -52 | NC_006560.1 | + | 2679 | 0.71 | 0.803634 |
Target: 5'- cGGGCGGCacggCGUCCACGACgACGaGGCg -3' miRNA: 3'- -CUCGUCGg---GUAGGUGUUGaUGUaCUG- -5' |
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31018 | 5' | -52 | NC_006560.1 | + | 4149 | 0.69 | 0.907171 |
Target: 5'- cGGCGGCUCAUggCCACGGCggcggcgGCGUGGg -3' miRNA: 3'- cUCGUCGGGUA--GGUGUUGa------UGUACUg -5' |
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31018 | 5' | -52 | NC_006560.1 | + | 7721 | 0.66 | 0.971946 |
Target: 5'- cGAGCAG-CCGUCUgcGCAcCUGCA-GACc -3' miRNA: 3'- -CUCGUCgGGUAGG--UGUuGAUGUaCUG- -5' |
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31018 | 5' | -52 | NC_006560.1 | + | 9901 | 0.66 | 0.974758 |
Target: 5'- cGAGCagGGCCCGUaCCGCcgcACUGCcaGGCg -3' miRNA: 3'- -CUCG--UCGGGUA-GGUGu--UGAUGuaCUG- -5' |
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31018 | 5' | -52 | NC_006560.1 | + | 14637 | 0.7 | 0.886746 |
Target: 5'- cGGGCGGCaCggCCGCAACacCAUGACg -3' miRNA: 3'- -CUCGUCGgGuaGGUGUUGauGUACUG- -5' |
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31018 | 5' | -52 | NC_006560.1 | + | 26128 | 0.73 | 0.724579 |
Target: 5'- cGGgGGCCCcgCCGgGGCUGCGUGGg -3' miRNA: 3'- cUCgUCGGGuaGGUgUUGAUGUACUg -5' |
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31018 | 5' | -52 | NC_006560.1 | + | 28920 | 0.66 | 0.974758 |
Target: 5'- gGGGcCGGCCCGcCCGCcccCUcaACAUGGCg -3' miRNA: 3'- -CUC-GUCGGGUaGGUGuu-GA--UGUACUG- -5' |
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31018 | 5' | -52 | NC_006560.1 | + | 30166 | 0.66 | 0.971946 |
Target: 5'- uGGGcCAGCCCGUCaccgACAGCgacgACAgcGACg -3' miRNA: 3'- -CUC-GUCGGGUAGg---UGUUGa---UGUa-CUG- -5' |
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31018 | 5' | -52 | NC_006560.1 | + | 31757 | 0.66 | 0.968916 |
Target: 5'- uGGGCGGCCgCAgcuUCCACAGCcug--GACu -3' miRNA: 3'- -CUCGUCGG-GU---AGGUGUUGauguaCUG- -5' |
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31018 | 5' | -52 | NC_006560.1 | + | 35239 | 0.7 | 0.871891 |
Target: 5'- cGGCGGCCgCcgCCGCAcCUGCggGGCc -3' miRNA: 3'- cUCGUCGG-GuaGGUGUuGAUGuaCUG- -5' |
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31018 | 5' | -52 | NC_006560.1 | + | 38815 | 0.67 | 0.950246 |
Target: 5'- cAGCAGCUCGUCCGCcgaGGCcACGgccucGACg -3' miRNA: 3'- cUCGUCGGGUAGGUG---UUGaUGUa----CUG- -5' |
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31018 | 5' | -52 | NC_006560.1 | + | 41135 | 0.66 | 0.977359 |
Target: 5'- uGAGguGCCgCAgggagCgCACGGCgaGCAUGGCg -3' miRNA: 3'- -CUCguCGG-GUa----G-GUGUUGa-UGUACUG- -5' |
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31018 | 5' | -52 | NC_006560.1 | + | 42579 | 0.69 | 0.913468 |
Target: 5'- cGGCGGCCaCGUCCGCcgccgagaGACgcgcgucccGCGUGACg -3' miRNA: 3'- cUCGUCGG-GUAGGUG--------UUGa--------UGUACUG- -5' |
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31018 | 5' | -52 | NC_006560.1 | + | 44726 | 0.67 | 0.958441 |
Target: 5'- --cCAGgCCAUCCGCA---GCAUGGCg -3' miRNA: 3'- cucGUCgGGUAGGUGUugaUGUACUG- -5' |
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31018 | 5' | -52 | NC_006560.1 | + | 48201 | 0.66 | 0.974758 |
Target: 5'- cGGCGGCCC-UCUACAACcgccUGCucgagGACc -3' miRNA: 3'- cUCGUCGGGuAGGUGUUG----AUGua---CUG- -5' |
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31018 | 5' | -52 | NC_006560.1 | + | 50917 | 0.66 | 0.971946 |
Target: 5'- -uGCAGCCCGucgaggccUCCGCGGuccccCUGC-UGGCg -3' miRNA: 3'- cuCGUCGGGU--------AGGUGUU-----GAUGuACUG- -5' |
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31018 | 5' | -52 | NC_006560.1 | + | 51212 | 0.67 | 0.96217 |
Target: 5'- gGAGCAGaCCGUCCAgUGGCUGucgGUGGCg -3' miRNA: 3'- -CUCGUCgGGUAGGU-GUUGAUg--UACUG- -5' |
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31018 | 5' | -52 | NC_006560.1 | + | 53027 | 0.68 | 0.941039 |
Target: 5'- cGGGCGGCaCCAcgggcUCCAUGcAgUGCAUGGCc -3' miRNA: 3'- -CUCGUCG-GGU-----AGGUGU-UgAUGUACUG- -5' |
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31018 | 5' | -52 | NC_006560.1 | + | 57082 | 0.67 | 0.958441 |
Target: 5'- uGGGcCAGCgCCGUcaggcCCGCGGCcGCGUGGCc -3' miRNA: 3'- -CUC-GUCG-GGUA-----GGUGUUGaUGUACUG- -5' |
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31018 | 5' | -52 | NC_006560.1 | + | 58850 | 0.66 | 0.974758 |
Target: 5'- gGGGCGGCCCugggGCAGCaGCAcGACg -3' miRNA: 3'- -CUCGUCGGGuaggUGUUGaUGUaCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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