miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31018 5' -52 NC_006560.1 + 111064 1.09 0.005232
Target:  5'- cGAGCAGCCCAUCCACAACUACAUGACc -3'
miRNA:   3'- -CUCGUCGGGUAGGUGUUGAUGUACUG- -5'
31018 5' -52 NC_006560.1 + 129057 0.78 0.444198
Target:  5'- cAGCGGCCCcUCCGCgAGCUGCGcGGCg -3'
miRNA:   3'- cUCGUCGGGuAGGUG-UUGAUGUaCUG- -5'
31018 5' -52 NC_006560.1 + 78348 0.74 0.650634
Target:  5'- cGGCGGCCCGcccgaccCCGCGGCgcGCGUGACg -3'
miRNA:   3'- cUCGUCGGGUa------GGUGUUGa-UGUACUG- -5'
31018 5' -52 NC_006560.1 + 26128 0.73 0.724579
Target:  5'- cGGgGGCCCcgCCGgGGCUGCGUGGg -3'
miRNA:   3'- cUCgUCGGGuaGGUgUUGAUGUACUg -5'
31018 5' -52 NC_006560.1 + 123434 0.73 0.724579
Target:  5'- cGGGcCGGCCCcugggCCACGACUGCGgccUGGCc -3'
miRNA:   3'- -CUC-GUCGGGua---GGUGUUGAUGU---ACUG- -5'
31018 5' -52 NC_006560.1 + 135776 0.72 0.765142
Target:  5'- -cGCGGCCCAga-ACAugUACGUGAa -3'
miRNA:   3'- cuCGUCGGGUaggUGUugAUGUACUg -5'
31018 5' -52 NC_006560.1 + 64615 0.72 0.774985
Target:  5'- cAGCGGCUUgaacuuGUUCAcCAGCUGCGUGACg -3'
miRNA:   3'- cUCGUCGGG------UAGGU-GUUGAUGUACUG- -5'
31018 5' -52 NC_006560.1 + 2679 0.71 0.803634
Target:  5'- cGGGCGGCacggCGUCCACGACgACGaGGCg -3'
miRNA:   3'- -CUCGUCGg---GUAGGUGUUGaUGUaCUG- -5'
31018 5' -52 NC_006560.1 + 68182 0.7 0.871891
Target:  5'- cGGCGcGCCCAUCCGCGug-GCG-GACg -3'
miRNA:   3'- cUCGU-CGGGUAGGUGUugaUGUaCUG- -5'
31018 5' -52 NC_006560.1 + 35239 0.7 0.871891
Target:  5'- cGGCGGCCgCcgCCGCAcCUGCggGGCc -3'
miRNA:   3'- cUCGUCGG-GuaGGUGUuGAUGuaCUG- -5'
31018 5' -52 NC_006560.1 + 14637 0.7 0.886746
Target:  5'- cGGGCGGCaCggCCGCAACacCAUGACg -3'
miRNA:   3'- -CUCGUCGgGuaGGUGUUGauGUACUG- -5'
31018 5' -52 NC_006560.1 + 144336 0.69 0.907171
Target:  5'- -cGCGGCCCcgCCGCGGgcGCGaGACg -3'
miRNA:   3'- cuCGUCGGGuaGGUGUUgaUGUaCUG- -5'
31018 5' -52 NC_006560.1 + 4149 0.69 0.907171
Target:  5'- cGGCGGCUCAUggCCACGGCggcggcgGCGUGGg -3'
miRNA:   3'- cUCGUCGGGUA--GGUGUUGa------UGUACUg -5'
31018 5' -52 NC_006560.1 + 63863 0.69 0.907171
Target:  5'- cAGCAcGCCCucAUCCGCAGCacggcCAUGAUg -3'
miRNA:   3'- cUCGU-CGGG--UAGGUGUUGau---GUACUG- -5'
31018 5' -52 NC_006560.1 + 42579 0.69 0.913468
Target:  5'- cGGCGGCCaCGUCCGCcgccgagaGACgcgcgucccGCGUGACg -3'
miRNA:   3'- cUCGUCGG-GUAGGUG--------UUGa--------UGUACUG- -5'
31018 5' -52 NC_006560.1 + 101813 0.69 0.919505
Target:  5'- gGAGCAGCg---CCGCGACcacgGCGUGGCc -3'
miRNA:   3'- -CUCGUCGgguaGGUGUUGa---UGUACUG- -5'
31018 5' -52 NC_006560.1 + 53027 0.68 0.941039
Target:  5'- cGGGCGGCaCCAcgggcUCCAUGcAgUGCAUGGCc -3'
miRNA:   3'- -CUCGUCG-GGU-----AGGUGU-UgAUGUACUG- -5'
31018 5' -52 NC_006560.1 + 80500 0.68 0.945771
Target:  5'- -cGCGGCCC-UCuCGCGgcGCUACGUG-Cg -3'
miRNA:   3'- cuCGUCGGGuAG-GUGU--UGAUGUACuG- -5'
31018 5' -52 NC_006560.1 + 121171 0.67 0.94981
Target:  5'- cGAGCAGCa---CCGCGGCgaggaagUACGUGGCg -3'
miRNA:   3'- -CUCGUCGgguaGGUGUUG-------AUGUACUG- -5'
31018 5' -52 NC_006560.1 + 38815 0.67 0.950246
Target:  5'- cAGCAGCUCGUCCGCcgaGGCcACGgccucGACg -3'
miRNA:   3'- cUCGUCGGGUAGGUG---UUGaUGUa----CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.