miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31019 3' -55.7 NC_006560.1 + 110571 1.06 0.004039
Target:  5'- uAUAUAAACCGCGCUCCCGCGGACCACc -3'
miRNA:   3'- -UAUAUUUGGCGCGAGGGCGCCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 149997 0.79 0.247606
Target:  5'- ---gGGGCCGCGCUCgggaCCGCGGGCgGCg -3'
miRNA:   3'- uauaUUUGGCGCGAG----GGCGCCUGgUG- -5'
31019 3' -55.7 NC_006560.1 + 42374 0.78 0.299801
Target:  5'- ---gGAAUCG-GCUCCCGCaGGGCCACg -3'
miRNA:   3'- uauaUUUGGCgCGAGGGCG-CCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 42998 0.78 0.304752
Target:  5'- ----cGACCGCGCcccgcagcacggccUCCCGCGGcGCCACg -3'
miRNA:   3'- uauauUUGGCGCG--------------AGGGCGCC-UGGUG- -5'
31019 3' -55.7 NC_006560.1 + 68273 0.78 0.306892
Target:  5'- ---gAGACCGCGCUCCuCGCGGAgaACc -3'
miRNA:   3'- uauaUUUGGCGCGAGG-GCGCCUggUG- -5'
31019 3' -55.7 NC_006560.1 + 90626 0.77 0.344267
Target:  5'- ---aGGACaCGcCGCUCgCGCGGGCCACg -3'
miRNA:   3'- uauaUUUG-GC-GCGAGgGCGCCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 25874 0.76 0.376447
Target:  5'- -----uGCaCGCGCUCCCGCcggcguGGGCCGCg -3'
miRNA:   3'- uauauuUG-GCGCGAGGGCG------CCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 150062 0.75 0.40188
Target:  5'- ----cGGCCGCGC-CCCGCGcccGGCCGCg -3'
miRNA:   3'- uauauUUGGCGCGaGGGCGC---CUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 36143 0.75 0.40188
Target:  5'- ---cGAGCCGgGCccgccggcguucUCCCGCGGACCGg -3'
miRNA:   3'- uauaUUUGGCgCG------------AGGGCGCCUGGUg -5'
31019 3' -55.7 NC_006560.1 + 120447 0.75 0.437436
Target:  5'- cGUcgAGGCCGUgguGCUgcucggcuccaCCCGCGGGCCGCg -3'
miRNA:   3'- -UAuaUUUGGCG---CGA-----------GGGCGCCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 1160 0.75 0.437436
Target:  5'- cUGgcGGCCGgGUUCuCUGCGGACCGCu -3'
miRNA:   3'- uAUauUUGGCgCGAG-GGCGCCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 149495 0.74 0.455879
Target:  5'- ---cGGGCCGaCGCUCCCcgccCGGGCCGCc -3'
miRNA:   3'- uauaUUUGGC-GCGAGGGc---GCCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 118565 0.74 0.47378
Target:  5'- ---gGAGCCgGCGCucggucucgcuggUCCCGCGGcACCACu -3'
miRNA:   3'- uauaUUUGG-CGCG-------------AGGGCGCC-UGGUG- -5'
31019 3' -55.7 NC_006560.1 + 125863 0.74 0.474732
Target:  5'- ------cCCGCGC-CCCGCGGGCCc- -3'
miRNA:   3'- uauauuuGGCGCGaGGGCGCCUGGug -5'
31019 3' -55.7 NC_006560.1 + 52121 0.74 0.484304
Target:  5'- gAUAUAAG--GCGCUCCgGCGGGCCGg -3'
miRNA:   3'- -UAUAUUUggCGCGAGGgCGCCUGGUg -5'
31019 3' -55.7 NC_006560.1 + 29767 0.74 0.493967
Target:  5'- ------cCCGC-CUCCCGgGGGCCGCg -3'
miRNA:   3'- uauauuuGGCGcGAGGGCgCCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 43680 0.73 0.503717
Target:  5'- ---cAGGCCGCGCUgCCCgaGCGGGgCGCg -3'
miRNA:   3'- uauaUUUGGCGCGA-GGG--CGCCUgGUG- -5'
31019 3' -55.7 NC_006560.1 + 49777 0.73 0.503717
Target:  5'- -----cGCCGCGCgCCCGCGGGCg-- -3'
miRNA:   3'- uauauuUGGCGCGaGGGCGCCUGgug -5'
31019 3' -55.7 NC_006560.1 + 79577 0.73 0.523461
Target:  5'- ---gGAGCCGCGCcccgcCCCGCGGGCa-- -3'
miRNA:   3'- uauaUUUGGCGCGa----GGGCGCCUGgug -5'
31019 3' -55.7 NC_006560.1 + 70441 0.73 0.523461
Target:  5'- ----cGGCCGCccugGCgggCCUGCGGGCCGCg -3'
miRNA:   3'- uauauUUGGCG----CGa--GGGCGCCUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.