miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31019 3' -55.7 NC_006560.1 + 97 0.69 0.757471
Target:  5'- ------cCCGCGCcccgccCCCGCGG-CCGCg -3'
miRNA:   3'- uauauuuGGCGCGa-----GGGCGCCuGGUG- -5'
31019 3' -55.7 NC_006560.1 + 1160 0.75 0.437436
Target:  5'- cUGgcGGCCGgGUUCuCUGCGGACCGCu -3'
miRNA:   3'- uAUauUUGGCgCGAG-GGCGCCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 1348 0.73 0.533444
Target:  5'- ---gGGACCGUGCgcgcggguccCCCGCGGcCCGCa -3'
miRNA:   3'- uauaUUUGGCGCGa---------GGGCGCCuGGUG- -5'
31019 3' -55.7 NC_006560.1 + 2631 0.66 0.891048
Target:  5'- -gGUAGACguggcggCGCGCgacgacgggCCCgucgGCGGGCCACu -3'
miRNA:   3'- uaUAUUUG-------GCGCGa--------GGG----CGCCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 3781 0.66 0.904813
Target:  5'- ---gGGACCGCGg-CgCGCGcGGCCGCc -3'
miRNA:   3'- uauaUUUGGCGCgaGgGCGC-CUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 4655 0.67 0.851839
Target:  5'- ----cGGCCGCGCggccgugaagcggCCCGUGGcgucgcgcccgGCCACg -3'
miRNA:   3'- uauauUUGGCGCGa------------GGGCGCC-----------UGGUG- -5'
31019 3' -55.7 NC_006560.1 + 7077 0.69 0.757471
Target:  5'- -----cACCuCGCggCCCGCGaGACCGCg -3'
miRNA:   3'- uauauuUGGcGCGa-GGGCGC-CUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 7185 0.67 0.85422
Target:  5'- ------cCCGCGggCCCGCGGccccggacauaaaGCCGCg -3'
miRNA:   3'- uauauuuGGCGCgaGGGCGCC-------------UGGUG- -5'
31019 3' -55.7 NC_006560.1 + 7422 0.72 0.584245
Target:  5'- ---gGGACCccagGCaGC-CCCGCGGACCGCc -3'
miRNA:   3'- uauaUUUGG----CG-CGaGGGCGCCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 7675 0.71 0.615202
Target:  5'- ----cGGCCGCGC-CCCGa-GACCACg -3'
miRNA:   3'- uauauUUGGCGCGaGGGCgcCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 8884 0.66 0.891727
Target:  5'- ---gAGGCgggGgGCUUCgCGCGGGCCACg -3'
miRNA:   3'- uauaUUUGg--CgCGAGG-GCGCCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 9463 0.71 0.656621
Target:  5'- aAUGUAAGuCUGCGUUCCCGgGucCCGCu -3'
miRNA:   3'- -UAUAUUU-GGCGCGAGGGCgCcuGGUG- -5'
31019 3' -55.7 NC_006560.1 + 10320 0.66 0.898388
Target:  5'- -----cGCCGCGa-CCCGCGGcCCGa -3'
miRNA:   3'- uauauuUGGCGCgaGGGCGCCuGGUg -5'
31019 3' -55.7 NC_006560.1 + 11923 0.69 0.737904
Target:  5'- ---gAAGCCGCGggCCCGCaggagGGGCCGg -3'
miRNA:   3'- uauaUUUGGCGCgaGGGCG-----CCUGGUg -5'
31019 3' -55.7 NC_006560.1 + 12045 0.68 0.813147
Target:  5'- -----cGCCGUcaGCUCCuCGacgaGGACCACg -3'
miRNA:   3'- uauauuUGGCG--CGAGG-GCg---CCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 13366 0.67 0.870358
Target:  5'- uUGUAG--CGCGCgCCCGgcCGGGCCGCc -3'
miRNA:   3'- uAUAUUugGCGCGaGGGC--GCCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 16152 0.69 0.74774
Target:  5'- -aGUAGAcCCGCGCcacgcUCCgGUgccGGACCACg -3'
miRNA:   3'- uaUAUUU-GGCGCG-----AGGgCG---CCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 16214 0.67 0.870358
Target:  5'- ---gGAGCCGgGC--CCGCGGGCCcgGCa -3'
miRNA:   3'- uauaUUUGGCgCGagGGCGCCUGG--UG- -5'
31019 3' -55.7 NC_006560.1 + 17504 0.68 0.830454
Target:  5'- --cUGGAgCGCGCggggCCgGCGGcGCCGCc -3'
miRNA:   3'- uauAUUUgGCGCGa---GGgCGCC-UGGUG- -5'
31019 3' -55.7 NC_006560.1 + 18361 0.66 0.891727
Target:  5'- ----uGGCCGCGCcCCUGaUGGACCu- -3'
miRNA:   3'- uauauUUGGCGCGaGGGC-GCCUGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.