miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31020 3' -59.7 NC_006560.1 + 109832 1.1 0.001491
Target:  5'- gGGAUUUCGGUCCCGGGGGACCCGCGAc -3'
miRNA:   3'- -CCUAAAGCCAGGGCCCCCUGGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 33297 0.83 0.100986
Target:  5'- uGGGUcgCGGaggCCCGGGGGGCCCGCc- -3'
miRNA:   3'- -CCUAaaGCCa--GGGCCCCCUGGGCGcu -5'
31020 3' -59.7 NC_006560.1 + 134819 0.78 0.221151
Target:  5'- cGGucgccaGGUCCCGGGGcagggcguGGCCCGCGAg -3'
miRNA:   3'- -CCuaaag-CCAGGGCCCC--------CUGGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 26006 0.77 0.254211
Target:  5'- aGGGgcgccgugCGGgCCgCGGGGGACCCGCGc -3'
miRNA:   3'- -CCUaaa-----GCCaGG-GCCCCCUGGGCGCu -5'
31020 3' -59.7 NC_006560.1 + 128288 0.76 0.272212
Target:  5'- gGGAg---GGcCCCGGGGGcgcGCCCGCGGg -3'
miRNA:   3'- -CCUaaagCCaGGGCCCCC---UGGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 117722 0.74 0.354416
Target:  5'- -----gCGGUCCCGGGGcGGCCCGg-- -3'
miRNA:   3'- ccuaaaGCCAGGGCCCC-CUGGGCgcu -5'
31020 3' -59.7 NC_006560.1 + 78899 0.74 0.354416
Target:  5'- cGAgg-CGuUCCCGGGGGcGCCCGCGu -3'
miRNA:   3'- cCUaaaGCcAGGGCCCCC-UGGGCGCu -5'
31020 3' -59.7 NC_006560.1 + 6607 0.74 0.377526
Target:  5'- gGGGgcUCGGgggCUCGGGGGACCgGgGGc -3'
miRNA:   3'- -CCUaaAGCCa--GGGCCCCCUGGgCgCU- -5'
31020 3' -59.7 NC_006560.1 + 142726 0.73 0.385451
Target:  5'- ------aGGcgCCCGGGGGGCCCgGCGGa -3'
miRNA:   3'- ccuaaagCCa-GGGCCCCCUGGG-CGCU- -5'
31020 3' -59.7 NC_006560.1 + 67341 0.73 0.393485
Target:  5'- cGGAgaucgCGGgCCCGGGG--CCCGCGAa -3'
miRNA:   3'- -CCUaaa--GCCaGGGCCCCcuGGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 27840 0.73 0.426686
Target:  5'- gGGGUgccgggGGUgCCGGGGGucucccGCCCGCGGc -3'
miRNA:   3'- -CCUAaag---CCAgGGCCCCC------UGGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 70578 0.72 0.434382
Target:  5'- -----aCGGUCgCCGGGGGcauccacGCCCGCGc -3'
miRNA:   3'- ccuaaaGCCAG-GGCCCCC-------UGGGCGCu -5'
31020 3' -59.7 NC_006560.1 + 109510 0.72 0.435242
Target:  5'- uGGcg-UCGuG-CCaCGGGGGACUCGCGAa -3'
miRNA:   3'- -CCuaaAGC-CaGG-GCCCCCUGGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 138190 0.72 0.452648
Target:  5'- ----aUCGcGUCCCGGGGcuGCCUGCGGc -3'
miRNA:   3'- ccuaaAGC-CAGGGCCCCc-UGGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 26042 0.71 0.488554
Target:  5'- cGGucccgUCGGgcgCCCGGGGG-CUCGgGAg -3'
miRNA:   3'- -CCuaa--AGCCa--GGGCCCCCuGGGCgCU- -5'
31020 3' -59.7 NC_006560.1 + 88428 0.71 0.49774
Target:  5'- uGGAaca-GGUCCacggCGGGGGucgcGCCCGCGGg -3'
miRNA:   3'- -CCUaaagCCAGG----GCCCCC----UGGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 26666 0.71 0.535208
Target:  5'- gGGGggaCGGggCCgCGGGGGgggacgggGCCCGCGAc -3'
miRNA:   3'- -CCUaaaGCCa-GG-GCCCCC--------UGGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 37276 0.7 0.544735
Target:  5'- -----gUGGUCCUGGGGGuCCUGCu- -3'
miRNA:   3'- ccuaaaGCCAGGGCCCCCuGGGCGcu -5'
31020 3' -59.7 NC_006560.1 + 29384 0.7 0.563946
Target:  5'- uGGGggUCcugggGGUCCUGGGGGuCCUGgGGg -3'
miRNA:   3'- -CCUaaAG-----CCAGGGCCCCCuGGGCgCU- -5'
31020 3' -59.7 NC_006560.1 + 33171 0.7 0.573619
Target:  5'- gGGAaggCGG-CCgCGGggaaGGGGCCCGCGGg -3'
miRNA:   3'- -CCUaaaGCCaGG-GCC----CCCUGGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.