miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31020 3' -59.7 NC_006560.1 + 4554 0.7 0.573619
Target:  5'- gGGGgcUCGGcCCCGGGccaGGGCUCGCc- -3'
miRNA:   3'- -CCUaaAGCCaGGGCCC---CCUGGGCGcu -5'
31020 3' -59.7 NC_006560.1 + 5147 0.66 0.784068
Target:  5'- cGGcg--CGGggCCCGGGccGGGgCCGCGGg -3'
miRNA:   3'- -CCuaaaGCCa-GGGCCC--CCUgGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 6607 0.74 0.377526
Target:  5'- gGGGgcUCGGgggCUCGGGGGACCgGgGGc -3'
miRNA:   3'- -CCUaaAGCCa--GGGCCCCCUGGgCgCU- -5'
31020 3' -59.7 NC_006560.1 + 6656 0.68 0.671421
Target:  5'- gGGGgcUCGGgggCUCGGGGGGaCCGgGGg -3'
miRNA:   3'- -CCUaaAGCCa--GGGCCCCCUgGGCgCU- -5'
31020 3' -59.7 NC_006560.1 + 6706 0.68 0.671421
Target:  5'- gGGGgcUCGGgggCUCGGGGGGaCCGgGGg -3'
miRNA:   3'- -CCUaaAGCCa--GGGCCCCCUgGGCgCU- -5'
31020 3' -59.7 NC_006560.1 + 6748 0.68 0.671421
Target:  5'- gGGGgcUCGGgggCUCGGGGGGaCCGgGGg -3'
miRNA:   3'- -CCUaaAGCCa--GGGCCCCCUgGGCgCU- -5'
31020 3' -59.7 NC_006560.1 + 6781 0.68 0.671421
Target:  5'- gGGGgcUCGGgggCUCGGGGGGaCCGgGGg -3'
miRNA:   3'- -CCUaaAGCCa--GGGCCCCCUgGGCgCU- -5'
31020 3' -59.7 NC_006560.1 + 6814 0.69 0.651865
Target:  5'- gGGGgcUCGGggggaCCgGGGGGACCgGgGGc -3'
miRNA:   3'- -CCUaaAGCCa----GGgCCCCCUGGgCgCU- -5'
31020 3' -59.7 NC_006560.1 + 8863 0.68 0.699551
Target:  5'- cGGggUCGGUCUggggugggggaggCGGGGGGCUucgCGCGGg -3'
miRNA:   3'- cCUaaAGCCAGG-------------GCCCCCUGG---GCGCU- -5'
31020 3' -59.7 NC_006560.1 + 10296 0.68 0.710118
Target:  5'- aGGGgg-CGGgccgCCGGGGaccgccgccgcGACCCGCGGc -3'
miRNA:   3'- -CCUaaaGCCag--GGCCCC-----------CUGGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 13383 0.67 0.738529
Target:  5'- -----cCGGgccgCCuCGGGGGcCCCGCGc -3'
miRNA:   3'- ccuaaaGCCa---GG-GCCCCCuGGGCGCu -5'
31020 3' -59.7 NC_006560.1 + 14209 0.7 0.593076
Target:  5'- gGGGUggUCGGg--CGGGGcGCCCGCGGu -3'
miRNA:   3'- -CCUAa-AGCCaggGCCCCcUGGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 17681 0.67 0.729133
Target:  5'- cGGGcgccgUGGggCCCGGGGGGgUCGUGGg -3'
miRNA:   3'- -CCUaaa--GCCa-GGGCCCCCUgGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 17957 0.68 0.661654
Target:  5'- cGGAgcuccgcggCGGcgCCCGGGGccccACCCGCGc -3'
miRNA:   3'- -CCUaaa------GCCa-GGGCCCCc---UGGGCGCu -5'
31020 3' -59.7 NC_006560.1 + 18639 0.69 0.655782
Target:  5'- ---gUUCGcGUCCCcgacgcgugggcggaGGGGGGCUCGUGGc -3'
miRNA:   3'- ccuaAAGC-CAGGG---------------CCCCCUGGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 25932 0.67 0.747839
Target:  5'- cGGAggcgugCGGUgCCggaGGGGGGCgagggCCGCGGg -3'
miRNA:   3'- -CCUaaa---GCCAgGG---CCCCCUG-----GGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 26006 0.77 0.254211
Target:  5'- aGGGgcgccgugCGGgCCgCGGGGGACCCGCGc -3'
miRNA:   3'- -CCUaaa-----GCCaGG-GCCCCCUGGGCGCu -5'
31020 3' -59.7 NC_006560.1 + 26042 0.71 0.488554
Target:  5'- cGGucccgUCGGgcgCCCGGGGG-CUCGgGAg -3'
miRNA:   3'- -CCuaa--AGCCa--GGGCCCCCuGGGCgCU- -5'
31020 3' -59.7 NC_006560.1 + 26666 0.71 0.535208
Target:  5'- gGGGggaCGGggCCgCGGGGGgggacgggGCCCGCGAc -3'
miRNA:   3'- -CCUaaaGCCa-GG-GCCCCC--------UGGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 27840 0.73 0.426686
Target:  5'- gGGGUgccgggGGUgCCGGGGGucucccGCCCGCGGc -3'
miRNA:   3'- -CCUAaag---CCAgGGCCCCC------UGGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.