miRNA display CGI


Results 41 - 60 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31020 5' -57.7 NC_006560.1 + 119758 0.67 0.763637
Target:  5'- gGCCugacgggGGCGCUgugCCGGGugGcGGUGc -3'
miRNA:   3'- gCGGuua----CCGCGA---GGCCCugCuCUAU- -5'
31020 5' -57.7 NC_006560.1 + 77642 0.67 0.763637
Target:  5'- aCGCgCGAguucgGGUGCcgCUGGGACGAGcUGg -3'
miRNA:   3'- -GCG-GUUa----CCGCGa-GGCCCUGCUCuAU- -5'
31020 5' -57.7 NC_006560.1 + 51346 0.67 0.763637
Target:  5'- aCGCCGAggacgaGGC-CUUCGGGACgGAGGc- -3'
miRNA:   3'- -GCGGUUa-----CCGcGAGGCCCUG-CUCUau -5'
31020 5' -57.7 NC_006560.1 + 48601 0.67 0.763637
Target:  5'- cCGCCAGgcGGCGCUCaaGGGACGc---- -3'
miRNA:   3'- -GCGGUUa-CCGCGAGg-CCCUGCucuau -5'
31020 5' -57.7 NC_006560.1 + 34266 0.67 0.763637
Target:  5'- uCGCCccgGGCGUaCCgcGGGACGGGGg- -3'
miRNA:   3'- -GCGGuuaCCGCGaGG--CCCUGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 3432 0.67 0.754155
Target:  5'- gGgCGcgGGCGCccgCgGGGGCGAGGa- -3'
miRNA:   3'- gCgGUuaCCGCGa--GgCCCUGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 99698 0.67 0.753201
Target:  5'- aCGCCGggGUGGUacacgccGC-CCGGGugGGGGg- -3'
miRNA:   3'- -GCGGU--UACCG-------CGaGGCCCugCUCUau -5'
31020 5' -57.7 NC_006560.1 + 99921 0.67 0.753201
Target:  5'- gGCCucggGGCGCUCgGgcgcggcGGACGGGAg- -3'
miRNA:   3'- gCGGuua-CCGCGAGgC-------CCUGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 143447 0.68 0.744567
Target:  5'- aCGCCcggGGCGa---GGGGCGAGGUGu -3'
miRNA:   3'- -GCGGuuaCCGCgaggCCCUGCUCUAU- -5'
31020 5' -57.7 NC_006560.1 + 66278 0.68 0.744567
Target:  5'- gGUCGAUGaacGCGCacgCCGGGACGGuGAUc -3'
miRNA:   3'- gCGGUUAC---CGCGa--GGCCCUGCU-CUAu -5'
31020 5' -57.7 NC_006560.1 + 55453 0.68 0.744567
Target:  5'- aGCCcggGGCGC-CCGGGGCaGGGc- -3'
miRNA:   3'- gCGGuuaCCGCGaGGCCCUGcUCUau -5'
31020 5' -57.7 NC_006560.1 + 133519 0.68 0.734881
Target:  5'- gGCCGGggucGGCgGCUUCGuGGGCGGGGa- -3'
miRNA:   3'- gCGGUUa---CCG-CGAGGC-CCUGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 85562 0.68 0.734881
Target:  5'- gGgCGggGGCgGCUCgGGGGCGGGGg- -3'
miRNA:   3'- gCgGUuaCCG-CGAGgCCCUGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 22881 0.68 0.734881
Target:  5'- aGCCGcccGGgGCUCUGGGGCgcgcccGAGGUGg -3'
miRNA:   3'- gCGGUua-CCgCGAGGCCCUG------CUCUAU- -5'
31020 5' -57.7 NC_006560.1 + 149200 0.68 0.730982
Target:  5'- cCGCCAuggcggcgagggGGCGCggcCCGGGGCG-GAc- -3'
miRNA:   3'- -GCGGUua----------CCGCGa--GGCCCUGCuCUau -5'
31020 5' -57.7 NC_006560.1 + 119502 0.68 0.725108
Target:  5'- uGCCGGgaGGUGcCUCCGGGccGCGGGGc- -3'
miRNA:   3'- gCGGUUa-CCGC-GAGGCCC--UGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 105798 0.68 0.725108
Target:  5'- gGCCGcUGGCGgUCUGGGccACGGGcgAg -3'
miRNA:   3'- gCGGUuACCGCgAGGCCC--UGCUCuaU- -5'
31020 5' -57.7 NC_006560.1 + 71885 0.68 0.715255
Target:  5'- uCGUCAccAUcGGCGCUCUGgGGAUGGGGc- -3'
miRNA:   3'- -GCGGU--UA-CCGCGAGGC-CCUGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 45610 0.68 0.702343
Target:  5'- uGUCGAUGcccgcguccucggcGCGCUUCGGGACGAa--- -3'
miRNA:   3'- gCGGUUAC--------------CGCGAGGCCCUGCUcuau -5'
31020 5' -57.7 NC_006560.1 + 55349 0.68 0.695348
Target:  5'- gGCC-GUGGUGCUCCagcacgGGGACGgucgcgGGGUAg -3'
miRNA:   3'- gCGGuUACCGCGAGG------CCCUGC------UCUAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.