miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31020 5' -57.7 NC_006560.1 + 109866 1.06 0.002863
Target:  5'- gCGCCAAUGGCGCUCCGGGACGAGAUAc -3'
miRNA:   3'- -GCGGUUACCGCGAGGCCCUGCUCUAU- -5'
31020 5' -57.7 NC_006560.1 + 101938 0.82 0.128509
Target:  5'- uCGCCGAUGGCGCgcgCCaGGGucGCGAGGUAg -3'
miRNA:   3'- -GCGGUUACCGCGa--GG-CCC--UGCUCUAU- -5'
31020 5' -57.7 NC_006560.1 + 77214 0.8 0.183366
Target:  5'- uGCgGAUGGUGCgcugCCGGGGCGAGGc- -3'
miRNA:   3'- gCGgUUACCGCGa---GGCCCUGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 8763 0.78 0.22879
Target:  5'- aCGCCuc-GGCGCUCUGGGucuGCGGGGUGa -3'
miRNA:   3'- -GCGGuuaCCGCGAGGCCC---UGCUCUAU- -5'
31020 5' -57.7 NC_006560.1 + 54914 0.75 0.355517
Target:  5'- aGCCGA-GGCGCUCgGGGGcCGGGGc- -3'
miRNA:   3'- gCGGUUaCCGCGAGgCCCU-GCUCUau -5'
31020 5' -57.7 NC_006560.1 + 90314 0.74 0.379542
Target:  5'- uCGCC-GUGGCGCUCCGGGcccgcaACGuGGa- -3'
miRNA:   3'- -GCGGuUACCGCGAGGCCC------UGCuCUau -5'
31020 5' -57.7 NC_006560.1 + 99357 0.73 0.430742
Target:  5'- gCGCCGGcugGGCGUaCUGGGGCGGGGg- -3'
miRNA:   3'- -GCGGUUa--CCGCGaGGCCCUGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 54861 0.73 0.457814
Target:  5'- cCGCCGGgaGGCGC-CCGGGagccGCGAGAc- -3'
miRNA:   3'- -GCGGUUa-CCGCGaGGCCC----UGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 26710 0.72 0.495269
Target:  5'- gCGCCGcgGGCGCgCCGGGguGCGAa--- -3'
miRNA:   3'- -GCGGUuaCCGCGaGGCCC--UGCUcuau -5'
31020 5' -57.7 NC_006560.1 + 52833 0.72 0.495269
Target:  5'- gCGCCGAcacGGCGCUgCGGcucGGCGAGAUc -3'
miRNA:   3'- -GCGGUUa--CCGCGAgGCC---CUGCUCUAu -5'
31020 5' -57.7 NC_006560.1 + 21022 0.72 0.495269
Target:  5'- cCGCCccgaagGGCGggCCGGGGCGGGGc- -3'
miRNA:   3'- -GCGGuua---CCGCgaGGCCCUGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 56562 0.72 0.504851
Target:  5'- aGCCGcgGGagcgaggguCGgUCCGGGGCGGGAUc -3'
miRNA:   3'- gCGGUuaCC---------GCgAGGCCCUGCUCUAu -5'
31020 5' -57.7 NC_006560.1 + 142513 0.72 0.504851
Target:  5'- gGCCcc-GGCGCccCCGGGGCGGGGc- -3'
miRNA:   3'- gCGGuuaCCGCGa-GGCCCUGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 148408 0.71 0.523272
Target:  5'- aCGCgg--GGCGCUCCGGGcgggccgGCGAGGa- -3'
miRNA:   3'- -GCGguuaCCGCGAGGCCC-------UGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 83853 0.71 0.524248
Target:  5'- gGCCcugcGGCGcCUCCGGGcCGAGGUc -3'
miRNA:   3'- gCGGuua-CCGC-GAGGCCCuGCUCUAu -5'
31020 5' -57.7 NC_006560.1 + 31127 0.71 0.524248
Target:  5'- gCGCCGggGGCGcCUCCGGcucGCGGGGa- -3'
miRNA:   3'- -GCGGUuaCCGC-GAGGCCc--UGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 28414 0.71 0.534053
Target:  5'- gGCCGG-GGCGggCCGGGGCGGGc-- -3'
miRNA:   3'- gCGGUUaCCGCgaGGCCCUGCUCuau -5'
31020 5' -57.7 NC_006560.1 + 116232 0.71 0.543923
Target:  5'- aGCUGcgGGCGUccgagUUCGGGGCGAGGg- -3'
miRNA:   3'- gCGGUuaCCGCG-----AGGCCCUGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 81130 0.71 0.543923
Target:  5'- gCGCCugcacGCGCUCgGGGugGAGGg- -3'
miRNA:   3'- -GCGGuuac-CGCGAGgCCCugCUCUau -5'
31020 5' -57.7 NC_006560.1 + 10478 0.71 0.553851
Target:  5'- cCGCCuc-GGgGC-CCGGGGCGGGGg- -3'
miRNA:   3'- -GCGGuuaCCgCGaGGCCCUGCUCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.