miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31020 5' -57.7 NC_006560.1 + 512 0.66 0.826292
Target:  5'- cCGCCAcgGGCGCcggGGGGCGGcGGc- -3'
miRNA:   3'- -GCGGUuaCCGCGaggCCCUGCU-CUau -5'
31020 5' -57.7 NC_006560.1 + 3432 0.67 0.754155
Target:  5'- gGgCGcgGGCGCccgCgGGGGCGAGGa- -3'
miRNA:   3'- gCgGUuaCCGCGa--GgCCCUGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 3594 0.7 0.614315
Target:  5'- gGCCAGcagcGGCGCggcggcgCCGGcGACGAGGc- -3'
miRNA:   3'- gCGGUUa---CCGCGa------GGCC-CUGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 6536 0.68 0.695348
Target:  5'- uCGCCucgGGgGCUCgggGGGACGGGGg- -3'
miRNA:   3'- -GCGGuuaCCgCGAGg--CCCUGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 8763 0.78 0.22879
Target:  5'- aCGCCuc-GGCGCUCUGGGucuGCGGGGUGa -3'
miRNA:   3'- -GCGGuuaCCGCGAGGCCC---UGCUCUAU- -5'
31020 5' -57.7 NC_006560.1 + 8840 0.66 0.809141
Target:  5'- gGCCGcgGGgGUUCCaugucGGGCGGGGUc -3'
miRNA:   3'- gCGGUuaCCgCGAGGc----CCUGCUCUAu -5'
31020 5' -57.7 NC_006560.1 + 10478 0.71 0.553851
Target:  5'- cCGCCuc-GGgGC-CCGGGGCGGGGg- -3'
miRNA:   3'- -GCGGuuaCCgCGaGGCCCUGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 11678 0.66 0.850694
Target:  5'- gGCUc--GGCGgUCCGGGcggGCGGGAUc -3'
miRNA:   3'- gCGGuuaCCGCgAGGCCC---UGCUCUAu -5'
31020 5' -57.7 NC_006560.1 + 12686 0.66 0.825451
Target:  5'- gCGCCGAcgaUGGCGC-CCguguggucggcggGGGugGGGGc- -3'
miRNA:   3'- -GCGGUU---ACCGCGaGG-------------CCCugCUCUau -5'
31020 5' -57.7 NC_006560.1 + 14288 0.66 0.850694
Target:  5'- uCGCCGGcGaGCGCggcgCCGGGGagGAGGUu -3'
miRNA:   3'- -GCGGUUaC-CGCGa---GGCCCUg-CUCUAu -5'
31020 5' -57.7 NC_006560.1 + 15327 0.67 0.799433
Target:  5'- gCGCCGGUcccguucgcggccGGCGCggCCGGGGuCGcGGUGa -3'
miRNA:   3'- -GCGGUUA-------------CCGCGa-GGCCCU-GCuCUAU- -5'
31020 5' -57.7 NC_006560.1 + 15744 0.69 0.644819
Target:  5'- aCGCCGggGGCGCgcgcgUCCGgGGGCGAc--- -3'
miRNA:   3'- -GCGGUuaCCGCG-----AGGC-CCUGCUcuau -5'
31020 5' -57.7 NC_006560.1 + 20059 0.66 0.809141
Target:  5'- aGCCAucggGGCGUUCCgacgGGGGCGGc--- -3'
miRNA:   3'- gCGGUua--CCGCGAGG----CCCUGCUcuau -5'
31020 5' -57.7 NC_006560.1 + 21022 0.72 0.495269
Target:  5'- cCGCCccgaagGGCGggCCGGGGCGGGGc- -3'
miRNA:   3'- -GCGGuua---CCGCgaGGCCCUGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 22642 0.66 0.83461
Target:  5'- cCGCCGAgacgGGCGUcgccgCCGGGcgcaGCGAGc-- -3'
miRNA:   3'- -GCGGUUa---CCGCGa----GGCCC----UGCUCuau -5'
31020 5' -57.7 NC_006560.1 + 22881 0.68 0.734881
Target:  5'- aGCCGcccGGgGCUCUGGGGCgcgcccGAGGUGg -3'
miRNA:   3'- gCGGUua-CCgCGAGGCCCUG------CUCUAU- -5'
31020 5' -57.7 NC_006560.1 + 25849 0.66 0.842747
Target:  5'- gGCCg--GGCGCgcgcCCGGGGCccGAUGc -3'
miRNA:   3'- gCGGuuaCCGCGa---GGCCCUGcuCUAU- -5'
31020 5' -57.7 NC_006560.1 + 26710 0.72 0.495269
Target:  5'- gCGCCGcgGGCGCgCCGGGguGCGAa--- -3'
miRNA:   3'- -GCGGUuaCCGCGaGGCCC--UGCUcuau -5'
31020 5' -57.7 NC_006560.1 + 26781 0.66 0.83461
Target:  5'- uGCCcgcGGCGCggaggagCCGGGgagaGCGAGAc- -3'
miRNA:   3'- gCGGuuaCCGCGa------GGCCC----UGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 26873 0.69 0.679269
Target:  5'- gCGCCcGUGGCGggagagcgagaccgaCgggggCCGGGACGGGGg- -3'
miRNA:   3'- -GCGGuUACCGC---------------Ga----GGCCCUGCUCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.