miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31021 3' -62.1 NC_006560.1 + 109052 1.09 0.000901
Target:  5'- cUCGCCCACCGGCCGCACGUCGCUCAGg -3'
miRNA:   3'- -AGCGGGUGGCCGGCGUGCAGCGAGUC- -5'
31021 3' -62.1 NC_006560.1 + 88907 0.81 0.07781
Target:  5'- gUCGCCgGCCGGCCGUGCcuGUCGCUCc- -3'
miRNA:   3'- -AGCGGgUGGCCGGCGUG--CAGCGAGuc -5'
31021 3' -62.1 NC_006560.1 + 125027 0.8 0.092983
Target:  5'- cCGCCCACCGGCgGCugGUgGCgcggCGGu -3'
miRNA:   3'- aGCGGGUGGCCGgCGugCAgCGa---GUC- -5'
31021 3' -62.1 NC_006560.1 + 17192 0.8 0.105232
Target:  5'- cCGCCCACCGGgCGCACGUCcaggaggGC-CAGg -3'
miRNA:   3'- aGCGGGUGGCCgGCGUGCAG-------CGaGUC- -5'
31021 3' -62.1 NC_006560.1 + 7538 0.78 0.142247
Target:  5'- gCGCCCACUGGCgcgcagaaGCGCGagGCUCGGg -3'
miRNA:   3'- aGCGGGUGGCCGg-------CGUGCagCGAGUC- -5'
31021 3' -62.1 NC_006560.1 + 95359 0.77 0.14579
Target:  5'- aCGCCCACCGGUucaUGCGCGcuUCGCUCc- -3'
miRNA:   3'- aGCGGGUGGCCG---GCGUGC--AGCGAGuc -5'
31021 3' -62.1 NC_006560.1 + 89549 0.76 0.181459
Target:  5'- gCGCCCgGCCGGCUGCACGgCGC-CAu -3'
miRNA:   3'- aGCGGG-UGGCCGGCGUGCaGCGaGUc -5'
31021 3' -62.1 NC_006560.1 + 24060 0.76 0.190371
Target:  5'- gCGCCC-CCGGCC-CGCGgCGCUCAc -3'
miRNA:   3'- aGCGGGuGGCCGGcGUGCaGCGAGUc -5'
31021 3' -62.1 NC_006560.1 + 34737 0.76 0.190371
Target:  5'- cUCGCCgCGgCGGcCCGCGCGUCGcCUCGc -3'
miRNA:   3'- -AGCGG-GUgGCC-GGCGUGCAGC-GAGUc -5'
31021 3' -62.1 NC_006560.1 + 47134 0.75 0.199666
Target:  5'- cCGUCgCGCCGGCCGCACG-CGCaacCGGa -3'
miRNA:   3'- aGCGG-GUGGCCGGCGUGCaGCGa--GUC- -5'
31021 3' -62.1 NC_006560.1 + 76971 0.75 0.214347
Target:  5'- aCGCCCuggGCCGGCUGCugGUCGaguUCGa -3'
miRNA:   3'- aGCGGG---UGGCCGGCGugCAGCg--AGUc -5'
31021 3' -62.1 NC_006560.1 + 47006 0.75 0.219443
Target:  5'- -aGCCCGCgGGCCGCGCccgcgggCGCUCGc -3'
miRNA:   3'- agCGGGUGgCCGGCGUGca-----GCGAGUc -5'
31021 3' -62.1 NC_006560.1 + 53633 0.75 0.219443
Target:  5'- gCGCCCugCGGCgGCuCGUUGC-CGGg -3'
miRNA:   3'- aGCGGGugGCCGgCGuGCAGCGaGUC- -5'
31021 3' -62.1 NC_006560.1 + 18787 0.75 0.224642
Target:  5'- gCGUCCugCGGCCGCgggacgccgucGCGUCGCgcccacgCGGg -3'
miRNA:   3'- aGCGGGugGCCGGCG-----------UGCAGCGa------GUC- -5'
31021 3' -62.1 NC_006560.1 + 132033 0.74 0.229945
Target:  5'- aCGCCC-CCGGCCGCcGCGcugCGCggCGGg -3'
miRNA:   3'- aGCGGGuGGCCGGCG-UGCa--GCGa-GUC- -5'
31021 3' -62.1 NC_006560.1 + 42345 0.74 0.240868
Target:  5'- -gGCCCAgCGcGCCGUGCaGUCGCUCGa -3'
miRNA:   3'- agCGGGUgGC-CGGCGUG-CAGCGAGUc -5'
31021 3' -62.1 NC_006560.1 + 37669 0.74 0.240868
Target:  5'- cUCGCCCGcggauCCGGCCGCGCcgggCGC-CGGg -3'
miRNA:   3'- -AGCGGGU-----GGCCGGCGUGca--GCGaGUC- -5'
31021 3' -62.1 NC_006560.1 + 78054 0.74 0.24649
Target:  5'- -gGCCCcggagcuggcgGCCGGCgGCGCGgccgcggCGCUCGGg -3'
miRNA:   3'- agCGGG-----------UGGCCGgCGUGCa------GCGAGUC- -5'
31021 3' -62.1 NC_006560.1 + 25312 0.74 0.24649
Target:  5'- cCG-CCGCCGcGCCGCGCGUgCGCUgGGc -3'
miRNA:   3'- aGCgGGUGGC-CGGCGUGCA-GCGAgUC- -5'
31021 3' -62.1 NC_006560.1 + 96216 0.74 0.2528
Target:  5'- cCGCCaacgcgucggucgagGCCGGCCGCGCGaCGCUgCGGg -3'
miRNA:   3'- aGCGGg--------------UGGCCGGCGUGCaGCGA-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.