miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31021 3' -62.1 NC_006560.1 + 184 0.66 0.626996
Target:  5'- -gGcCCCGCCGGCguuuuuuuccgcgCGCGCGcCGCcgCGGg -3'
miRNA:   3'- agC-GGGUGGCCG-------------GCGUGCaGCGa-GUC- -5'
31021 3' -62.1 NC_006560.1 + 800 0.71 0.344195
Target:  5'- uUCGCUU-CCGGCCGC-CG-CGCUCAc -3'
miRNA:   3'- -AGCGGGuGGCCGGCGuGCaGCGAGUc -5'
31021 3' -62.1 NC_006560.1 + 838 0.66 0.637767
Target:  5'- aCGCCCACgaGGCCccGCGCG-CGCcCGc -3'
miRNA:   3'- aGCGGGUGg-CCGG--CGUGCaGCGaGUc -5'
31021 3' -62.1 NC_006560.1 + 887 0.69 0.457951
Target:  5'- gCGCCCGCCccccgccggGGCCGC-CGgcCGCUCc- -3'
miRNA:   3'- aGCGGGUGG---------CCGGCGuGCa-GCGAGuc -5'
31021 3' -62.1 NC_006560.1 + 1498 0.66 0.647554
Target:  5'- -gGCCCacGCCGGCgggaGCGCGU-GCaUCGGg -3'
miRNA:   3'- agCGGG--UGGCCGg---CGUGCAgCG-AGUC- -5'
31021 3' -62.1 NC_006560.1 + 1587 0.67 0.578224
Target:  5'- gCGCCCccuccuccgaucgACgCGGCCgGCGCG-CGCUCu- -3'
miRNA:   3'- aGCGGG-------------UG-GCCGG-CGUGCaGCGAGuc -5'
31021 3' -62.1 NC_006560.1 + 2197 0.7 0.423367
Target:  5'- -gGCgCGCgCGGCCGCGCGguccagCGC-CAGg -3'
miRNA:   3'- agCGgGUG-GCCGGCGUGCa-----GCGaGUC- -5'
31021 3' -62.1 NC_006560.1 + 3292 0.67 0.588905
Target:  5'- -gGCCCGCCGGgCGgGCGggcggugagCGCcgCGGg -3'
miRNA:   3'- agCGGGUGGCCgGCgUGCa--------GCGa-GUC- -5'
31021 3' -62.1 NC_006560.1 + 3465 0.67 0.559881
Target:  5'- gCGCUUGCgGGCCGCGCGggcgGCgUCGGc -3'
miRNA:   3'- aGCGGGUGgCCGGCGUGCag--CG-AGUC- -5'
31021 3' -62.1 NC_006560.1 + 4051 0.66 0.627975
Target:  5'- gCGCggCGCCGGCCGCGgCGgCGUUCu- -3'
miRNA:   3'- aGCGg-GUGGCCGGCGU-GCaGCGAGuc -5'
31021 3' -62.1 NC_006560.1 + 4397 0.67 0.588905
Target:  5'- -gGCgUACUGGCgCGCgGCGUCGCcCAGc -3'
miRNA:   3'- agCGgGUGGCCG-GCG-UGCAGCGaGUC- -5'
31021 3' -62.1 NC_006560.1 + 4429 0.67 0.608408
Target:  5'- gCGCCCACaCGGgCGCGgGcgCGC-CGGc -3'
miRNA:   3'- aGCGGGUG-GCCgGCGUgCa-GCGaGUC- -5'
31021 3' -62.1 NC_006560.1 + 4654 0.67 0.55892
Target:  5'- gCGgCCGCgCGGCCGUgaagcggcccgugGCGUCGCgccCGGc -3'
miRNA:   3'- aGCgGGUG-GCCGGCG-------------UGCAGCGa--GUC- -5'
31021 3' -62.1 NC_006560.1 + 4890 0.71 0.351616
Target:  5'- gCGCCgGCgggGGCCGCGuCG-CGCUCGGg -3'
miRNA:   3'- aGCGGgUGg--CCGGCGU-GCaGCGAGUC- -5'
31021 3' -62.1 NC_006560.1 + 7538 0.78 0.142247
Target:  5'- gCGCCCACUGGCgcgcagaaGCGCGagGCUCGGg -3'
miRNA:   3'- aGCGGGUGGCCGg-------CGUGCagCGAGUC- -5'
31021 3' -62.1 NC_006560.1 + 7570 0.66 0.647554
Target:  5'- -gGCCC-CgGGCCGCcauuCG-CGCUCGa -3'
miRNA:   3'- agCGGGuGgCCGGCGu---GCaGCGAGUc -5'
31021 3' -62.1 NC_006560.1 + 7660 0.68 0.502277
Target:  5'- gUCGCCCcucuggGCCGGCCGCgccccgagaccacGCGaccgcggCGCUCu- -3'
miRNA:   3'- -AGCGGG------UGGCCGGCG-------------UGCa------GCGAGuc -5'
31021 3' -62.1 NC_006560.1 + 8831 0.69 0.449162
Target:  5'- gCGUCgGCCGGCCGCGgggguuccaUGUCGggCGGg -3'
miRNA:   3'- aGCGGgUGGCCGGCGU---------GCAGCgaGUC- -5'
31021 3' -62.1 NC_006560.1 + 9779 0.67 0.578224
Target:  5'- -aGCCCGCCGcUCGCcucggagGCGUCGCggagcugCAGg -3'
miRNA:   3'- agCGGGUGGCcGGCG-------UGCAGCGa------GUC- -5'
31021 3' -62.1 NC_006560.1 + 11290 0.66 0.647554
Target:  5'- gUCGCCCaggcgcGCCagGGCCGCcuCGUucacggccgagaUGCUCGGg -3'
miRNA:   3'- -AGCGGG------UGG--CCGGCGu-GCA------------GCGAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.