miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31021 5' -56.4 NC_006560.1 + 62856 0.66 0.857882
Target:  5'- -cCGGAGCUccCGCaGCaGCGCGU-GUUGg -3'
miRNA:   3'- acGCCUCGA--GCGaCG-CGUGCAuCAAC- -5'
31021 5' -56.4 NC_006560.1 + 73424 0.66 0.87299
Target:  5'- cGCGGAGCUggagcgccaGCUGCGgGCGa----- -3'
miRNA:   3'- aCGCCUCGAg--------CGACGCgUGCaucaac -5'
31021 5' -56.4 NC_006560.1 + 80522 0.68 0.78976
Target:  5'- gUGCGGAGCaccggUCGCaGCGCGC-UGGc-- -3'
miRNA:   3'- -ACGCCUCG-----AGCGaCGCGUGcAUCaac -5'
31021 5' -56.4 NC_006560.1 + 81965 0.66 0.880219
Target:  5'- cGCaGGGGCgggUUGCUGgGCAgGUAGg-- -3'
miRNA:   3'- aCG-CCUCG---AGCGACgCGUgCAUCaac -5'
31021 5' -56.4 NC_006560.1 + 88442 0.68 0.780508
Target:  5'- gGCGGGGgUCGCgcccgcggGCGCGCGg----- -3'
miRNA:   3'- aCGCCUCgAGCGa-------CGCGUGCaucaac -5'
31021 5' -56.4 NC_006560.1 + 91322 0.75 0.37361
Target:  5'- gGCGGAGCUCGagaacCUGCaGUACGUGGa-- -3'
miRNA:   3'- aCGCCUCGAGC-----GACG-CGUGCAUCaac -5'
31021 5' -56.4 NC_006560.1 + 94454 0.67 0.833687
Target:  5'- cGCGGGcGCgcgCGCUGCGCGUGcUGGa-- -3'
miRNA:   3'- aCGCCU-CGa--GCGACGCGUGC-AUCaac -5'
31021 5' -56.4 NC_006560.1 + 101810 0.66 0.857882
Target:  5'- gGCGGAGCagCGCcGCGacCACGgcGUg- -3'
miRNA:   3'- aCGCCUCGa-GCGaCGC--GUGCauCAac -5'
31021 5' -56.4 NC_006560.1 + 109086 1.09 0.00235
Target:  5'- cUGCGGAGCUCGCUGCGCACGUAGUUGg -3'
miRNA:   3'- -ACGCCUCGAGCGACGCGUGCAUCAAC- -5'
31021 5' -56.4 NC_006560.1 + 112817 0.66 0.857882
Target:  5'- cGUGGAggcGCUCGC-GCaGCugGUGGgcGa -3'
miRNA:   3'- aCGCCU---CGAGCGaCG-CGugCAUCaaC- -5'
31021 5' -56.4 NC_006560.1 + 116129 0.68 0.76161
Target:  5'- aUG-GGGGCgaaCGCgugGUGCGCGUGGggGg -3'
miRNA:   3'- -ACgCCUCGa--GCGa--CGCGUGCAUCaaC- -5'
31021 5' -56.4 NC_006560.1 + 124122 0.66 0.880219
Target:  5'- cGCGGGGCacccacggcgUCGCgGCGC-CGgcGggGg -3'
miRNA:   3'- aCGCCUCG----------AGCGaCGCGuGCauCaaC- -5'
31021 5' -56.4 NC_006560.1 + 126454 0.7 0.661641
Target:  5'- cGCGGuGCcuggCGUcGCGCACGUGGcgGa -3'
miRNA:   3'- aCGCCuCGa---GCGaCGCGUGCAUCaaC- -5'
31021 5' -56.4 NC_006560.1 + 128260 0.66 0.865542
Target:  5'- cUGCaGGAGg-CGCUGCGCGCcgAGggGg -3'
miRNA:   3'- -ACG-CCUCgaGCGACGCGUGcaUCaaC- -5'
31021 5' -56.4 NC_006560.1 + 128848 0.71 0.579435
Target:  5'- cGCGGAGCUCGC-GCGUcuACGcccGGUUc -3'
miRNA:   3'- aCGCCUCGAGCGaCGCG--UGCa--UCAAc -5'
31021 5' -56.4 NC_006560.1 + 129871 0.67 0.833687
Target:  5'- cGCGGAggcgcGCUUccgGCUGCGCgcgcccGCGUGGggGc -3'
miRNA:   3'- aCGCCU-----CGAG---CGACGCG------UGCAUCaaC- -5'
31021 5' -56.4 NC_006560.1 + 130811 0.67 0.846811
Target:  5'- cGCGGGGCcaCGCgcaggccgugacgGCGCGCGUccuGGUg- -3'
miRNA:   3'- aCGCCUCGa-GCGa------------CGCGUGCA---UCAac -5'
31021 5' -56.4 NC_006560.1 + 131874 0.7 0.692296
Target:  5'- cUGCGGGGCgcggUCGCgGCGUACGcGGa-- -3'
miRNA:   3'- -ACGCCUCG----AGCGaCGCGUGCaUCaac -5'
31021 5' -56.4 NC_006560.1 + 134193 0.68 0.76161
Target:  5'- gGCGGAGCU-GCUGCugGCGCGg----- -3'
miRNA:   3'- aCGCCUCGAgCGACG--CGUGCaucaac -5'
31021 5' -56.4 NC_006560.1 + 134547 0.69 0.722493
Target:  5'- cGCGGGcguGCUCGCggaGCGCGCGg----- -3'
miRNA:   3'- aCGCCU---CGAGCGa--CGCGUGCaucaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.