miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31022 3' -59 NC_006560.1 + 10857 0.72 0.486919
Target:  5'- cGCGCGUCGCUagCGAcCGGaGCGGggaacgaUCCa -3'
miRNA:   3'- -CGCGCAGCGAggGCU-GCC-CGUCa------AGG- -5'
31022 3' -59 NC_006560.1 + 11242 0.69 0.66123
Target:  5'- cGgGCGcCGCUuggCCCGACGgGGCGacUCCg -3'
miRNA:   3'- -CgCGCaGCGA---GGGCUGC-CCGUcaAGG- -5'
31022 3' -59 NC_006560.1 + 11618 0.67 0.746197
Target:  5'- gGCGggggaGUCGCUUCCGGgggcucggcggucCGGGCGGgcgggggagucgcUUCCg -3'
miRNA:   3'- -CGCg----CAGCGAGGGCU-------------GCCCGUC-------------AAGG- -5'
31022 3' -59 NC_006560.1 + 12070 0.72 0.486919
Target:  5'- aCGCGggggcaGCggucgCCCGGCGGGUAGUggaacagcUCCa -3'
miRNA:   3'- cGCGCag----CGa----GGGCUGCCCGUCA--------AGG- -5'
31022 3' -59 NC_006560.1 + 12195 0.73 0.423864
Target:  5'- gGCGcCGUcCGC-CCCGACGGGCcccgcggccaggaGGgagUCCg -3'
miRNA:   3'- -CGC-GCA-GCGaGGGCUGCCCG-------------UCa--AGG- -5'
31022 3' -59 NC_006560.1 + 13540 0.66 0.835293
Target:  5'- aCGCGcCGCa--CGuCGGGCGGgUCCg -3'
miRNA:   3'- cGCGCaGCGaggGCuGCCCGUCaAGG- -5'
31022 3' -59 NC_006560.1 + 14146 0.67 0.766531
Target:  5'- cGCGCaGagGCcCCCGAUcaccagGGGCAGggcgcggUCCg -3'
miRNA:   3'- -CGCG-CagCGaGGGCUG------CCCGUCa------AGG- -5'
31022 3' -59 NC_006560.1 + 14618 0.69 0.631604
Target:  5'- gGCGCGgcccUCGggCCCG-CGGGCGGcacggCCg -3'
miRNA:   3'- -CGCGC----AGCgaGGGCuGCCCGUCaa---GG- -5'
31022 3' -59 NC_006560.1 + 14878 0.66 0.8106
Target:  5'- gGCGgggagagGUCGUUCCCGGgccCGGGuCGGggCCc -3'
miRNA:   3'- -CGCg------CAGCGAGGGCU---GCCC-GUCaaGG- -5'
31022 3' -59 NC_006560.1 + 15187 0.72 0.486919
Target:  5'- cGgGCGUCGCgcccUCCGGCGgGGCGggacucGUUCCc -3'
miRNA:   3'- -CgCGCAGCGa---GGGCUGC-CCGU------CAAGG- -5'
31022 3' -59 NC_006560.1 + 15276 0.68 0.710063
Target:  5'- gGCGCgGUCGCgggagCCGGCGcggcGGCGGUggCCu -3'
miRNA:   3'- -CGCG-CAGCGag---GGCUGC----CCGUCAa-GG- -5'
31022 3' -59 NC_006560.1 + 15448 0.68 0.690658
Target:  5'- cGCGCGuUCGCgccgCCCGGgccagGGGCucgUCCu -3'
miRNA:   3'- -CGCGC-AGCGa---GGGCUg----CCCGucaAGG- -5'
31022 3' -59 NC_006560.1 + 17628 0.66 0.793371
Target:  5'- uGCGCaUCucggccaacaGCUCCCGgauccggcagagGCGGGCGGccucgUCCc -3'
miRNA:   3'- -CGCGcAG----------CGAGGGC------------UGCCCGUCa----AGG- -5'
31022 3' -59 NC_006560.1 + 17889 0.67 0.7756
Target:  5'- aGCGgG-CGC-CCCGGCGGaGCGc-UCCg -3'
miRNA:   3'- -CGCgCaGCGaGGGCUGCC-CGUcaAGG- -5'
31022 3' -59 NC_006560.1 + 18811 0.72 0.468687
Target:  5'- uCGCGUCGCgCCCacgcgggugcGuCGGGCGGcUCCg -3'
miRNA:   3'- cGCGCAGCGaGGG----------CuGCCCGUCaAGG- -5'
31022 3' -59 NC_006560.1 + 18933 0.73 0.424718
Target:  5'- uGCGCGgcgugccgCGCggggCCCGGCGGGCg---CCg -3'
miRNA:   3'- -CGCGCa-------GCGa---GGGCUGCCCGucaaGG- -5'
31022 3' -59 NC_006560.1 + 20039 0.67 0.738687
Target:  5'- cCGCGUCGCccgucgUUCCGAgccaucgGGGC-GUUCCg -3'
miRNA:   3'- cGCGCAGCG------AGGGCUg------CCCGuCAAGG- -5'
31022 3' -59 NC_006560.1 + 20896 0.69 0.641489
Target:  5'- gGCGCGgCGUUCCCGGgcggUGGGCgcggagcgaggAGggCCg -3'
miRNA:   3'- -CGCGCaGCGAGGGCU----GCCCG-----------UCaaGG- -5'
31022 3' -59 NC_006560.1 + 21616 0.7 0.572543
Target:  5'- cGCGCGgcgccgccggcCGCaugcuaaugcgaUCCuCGACGGGCGGcgCCg -3'
miRNA:   3'- -CGCGCa----------GCG------------AGG-GCUGCCCGUCaaGG- -5'
31022 3' -59 NC_006560.1 + 21681 0.66 0.793371
Target:  5'- aUGCGa---UCCuCGACGGGCGGcgCCg -3'
miRNA:   3'- cGCGCagcgAGG-GCUGCCCGUCaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.