miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31022 3' -59 NC_006560.1 + 3 0.78 0.208628
Target:  5'- cCGCGcCGCguuUCCCGGCgGGGCGGUUCg -3'
miRNA:   3'- cGCGCaGCG---AGGGCUG-CCCGUCAAGg -5'
31022 3' -59 NC_006560.1 + 58 0.66 0.818992
Target:  5'- gGCGCGUUugggGCgggUCCgGGCGGGCcc-UCCc -3'
miRNA:   3'- -CGCGCAG----CG---AGGgCUGCCCGucaAGG- -5'
31022 3' -59 NC_006560.1 + 442 0.69 0.641489
Target:  5'- cCGCGgccucCGCggccucCCCGGCGGGCGG--CCa -3'
miRNA:   3'- cGCGCa----GCGa-----GGGCUGCCCGUCaaGG- -5'
31022 3' -59 NC_006560.1 + 988 0.69 0.631604
Target:  5'- gGCGCGccccUCGC-CCCGGCcgGGGCGccGUcUCCg -3'
miRNA:   3'- -CGCGC----AGCGaGGGCUG--CCCGU--CA-AGG- -5'
31022 3' -59 NC_006560.1 + 1176 0.71 0.543458
Target:  5'- cUGCGgacCGCUCgC-ACGGGCAGaUUCCg -3'
miRNA:   3'- cGCGCa--GCGAGgGcUGCCCGUC-AAGG- -5'
31022 3' -59 NC_006560.1 + 1614 0.66 0.8106
Target:  5'- gGCGCG-CGCUCU--GCGGGCuucGcgCCu -3'
miRNA:   3'- -CGCGCaGCGAGGgcUGCCCGu--CaaGG- -5'
31022 3' -59 NC_006560.1 + 2122 0.66 0.8106
Target:  5'- cGCgGCGUCGgggUCCGGCucGGGCAGggCg -3'
miRNA:   3'- -CG-CGCAGCga-GGGCUG--CCCGUCaaGg -5'
31022 3' -59 NC_006560.1 + 2153 0.75 0.322861
Target:  5'- cGCGCGcagaaggCGCgcagCgCGGCGGGCAGggCCu -3'
miRNA:   3'- -CGCGCa------GCGa---GgGCUGCCCGUCaaGG- -5'
31022 3' -59 NC_006560.1 + 2589 0.67 0.7756
Target:  5'- aGCGgaCGUCGCacugCgCGGCGGGCAGc--- -3'
miRNA:   3'- -CGC--GCAGCGa---GgGCUGCCCGUCaagg -5'
31022 3' -59 NC_006560.1 + 2909 0.73 0.424718
Target:  5'- cGCGCGgCGgUCCaGGCGGGCGGggCg -3'
miRNA:   3'- -CGCGCaGCgAGGgCUGCCCGUCaaGg -5'
31022 3' -59 NC_006560.1 + 3283 0.68 0.690658
Target:  5'- cGgGgGUCGggCCCGccgggcggGCGGGCGGUgagcgCCg -3'
miRNA:   3'- -CgCgCAGCgaGGGC--------UGCCCGUCAa----GG- -5'
31022 3' -59 NC_006560.1 + 3391 0.68 0.730171
Target:  5'- gGCGCGggccggcucuucuugCGCg-CCGGCGGGCGGg--- -3'
miRNA:   3'- -CGCGCa--------------GCGagGGCUGCCCGUCaagg -5'
31022 3' -59 NC_006560.1 + 3743 0.67 0.75735
Target:  5'- cGCGCGggCGCggCgCgGGCGcGGCGGcgCCg -3'
miRNA:   3'- -CGCGCa-GCGa-G-GgCUGC-CCGUCaaGG- -5'
31022 3' -59 NC_006560.1 + 4440 0.66 0.8106
Target:  5'- gGCGCGggCGCg-CCGGCGGccucGUAGcgCCg -3'
miRNA:   3'- -CGCGCa-GCGagGGCUGCC----CGUCaaGG- -5'
31022 3' -59 NC_006560.1 + 4682 0.69 0.671071
Target:  5'- -gGCGUCGCgCCCGGCcacGGCGGcgCg -3'
miRNA:   3'- cgCGCAGCGaGGGCUGc--CCGUCaaGg -5'
31022 3' -59 NC_006560.1 + 4903 0.67 0.75735
Target:  5'- cCGCGUCGCgCUCGGggucCGGGUccGGgUCCg -3'
miRNA:   3'- cGCGCAGCGaGGGCU----GCCCG--UCaAGG- -5'
31022 3' -59 NC_006560.1 + 5337 0.66 0.835293
Target:  5'- cCGgGUCcgGCgUCCuCGGCGGGCcGUcgUCCg -3'
miRNA:   3'- cGCgCAG--CG-AGG-GCUGCCCGuCA--AGG- -5'
31022 3' -59 NC_006560.1 + 6337 0.68 0.680883
Target:  5'- cGCGCGggcgcccCGC-CCCGGCccgcccuucgGGGCGGgcCCg -3'
miRNA:   3'- -CGCGCa------GCGaGGGCUG----------CCCGUCaaGG- -5'
31022 3' -59 NC_006560.1 + 8829 0.66 0.827225
Target:  5'- cCGCGUCGg-CCgGccGCGGG-GGUUCCa -3'
miRNA:   3'- cGCGCAGCgaGGgC--UGCCCgUCAAGG- -5'
31022 3' -59 NC_006560.1 + 9175 0.66 0.818992
Target:  5'- gGCGCcUCGggCCCgcGACGGGCgucAGcgCCg -3'
miRNA:   3'- -CGCGcAGCgaGGG--CUGCCCG---UCaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.