miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31022 3' -59 NC_006560.1 + 108058 1.12 0.001084
Target:  5'- cGCGCGUCGCUCCCGACGGGCAGUUCCc -3'
miRNA:   3'- -CGCGCAGCGAGGGCUGCCCGUCAAGG- -5'
31022 3' -59 NC_006560.1 + 3 0.78 0.208628
Target:  5'- cCGCGcCGCguuUCCCGGCgGGGCGGUUCg -3'
miRNA:   3'- cGCGCaGCG---AGGGCUG-CCCGUCAAGg -5'
31022 3' -59 NC_006560.1 + 150332 0.78 0.208628
Target:  5'- cCGCGcCGCguuUCCCGGCgGGGCGGUUCg -3'
miRNA:   3'- cGCGCaGCG---AGGGCUG-CCCGUCAAGg -5'
31022 3' -59 NC_006560.1 + 148493 0.77 0.246038
Target:  5'- aGCGCGgaggC-CUCCCGGCGGGaCGGcggUCCg -3'
miRNA:   3'- -CGCGCa---GcGAGGGCUGCCC-GUCa--AGG- -5'
31022 3' -59 NC_006560.1 + 132961 0.76 0.276044
Target:  5'- gGCG-GUCGCgugggCCCGG-GGGCAGUUCUc -3'
miRNA:   3'- -CGCgCAGCGa----GGGCUgCCCGUCAAGG- -5'
31022 3' -59 NC_006560.1 + 2153 0.75 0.322861
Target:  5'- cGCGCGcagaaggCGCgcagCgCGGCGGGCAGggCCu -3'
miRNA:   3'- -CGCGCa------GCGa---GgGCUGCCCGUCaaGG- -5'
31022 3' -59 NC_006560.1 + 107538 0.75 0.344666
Target:  5'- cCGCGUCGC-CCgGACGGGCcucccgUCCc -3'
miRNA:   3'- cGCGCAGCGaGGgCUGCCCGuca---AGG- -5'
31022 3' -59 NC_006560.1 + 26263 0.74 0.386519
Target:  5'- gGCGCGUCGCggggcUcgcgccgccggggagCCUGGCGGGCGGcUUCUg -3'
miRNA:   3'- -CGCGCAGCG-----A---------------GGGCUGCCCGUC-AAGG- -5'
31022 3' -59 NC_006560.1 + 57756 0.74 0.391372
Target:  5'- gGCGCG-CGCg-UCGGCGGGCAGcaCCa -3'
miRNA:   3'- -CGCGCaGCGagGGCUGCCCGUCaaGG- -5'
31022 3' -59 NC_006560.1 + 121716 0.74 0.399548
Target:  5'- aGCGCGUC---UCCGGCGGGCAGc-CCg -3'
miRNA:   3'- -CGCGCAGcgaGGGCUGCCCGUCaaGG- -5'
31022 3' -59 NC_006560.1 + 131660 0.73 0.407832
Target:  5'- aGgGCGUCGCcggcgaggcCCUGGCGGGCGGggggcugcUCCg -3'
miRNA:   3'- -CgCGCAGCGa--------GGGCUGCCCGUCa-------AGG- -5'
31022 3' -59 NC_006560.1 + 114684 0.73 0.416223
Target:  5'- aGCuCGUCGaggaCCCGuGCGGGCuGUUCCa -3'
miRNA:   3'- -CGcGCAGCga--GGGC-UGCCCGuCAAGG- -5'
31022 3' -59 NC_006560.1 + 12195 0.73 0.423864
Target:  5'- gGCGcCGUcCGC-CCCGACGGGCcccgcggccaggaGGgagUCCg -3'
miRNA:   3'- -CGC-GCA-GCGaGGGCUGCCCG-------------UCa--AGG- -5'
31022 3' -59 NC_006560.1 + 18933 0.73 0.424718
Target:  5'- uGCGCGgcgugccgCGCggggCCCGGCGGGCg---CCg -3'
miRNA:   3'- -CGCGCa-------GCGa---GGGCUGCCCGucaaGG- -5'
31022 3' -59 NC_006560.1 + 2909 0.73 0.424718
Target:  5'- cGCGCGgCGgUCCaGGCGGGCGGggCg -3'
miRNA:   3'- -CGCGCaGCgAGGgCUGCCCGUCaaGg -5'
31022 3' -59 NC_006560.1 + 87155 0.73 0.433316
Target:  5'- cGCGCuG-CGCgggCCCGGCGGcGUAGUaCCg -3'
miRNA:   3'- -CGCG-CaGCGa--GGGCUGCC-CGUCAaGG- -5'
31022 3' -59 NC_006560.1 + 77087 0.73 0.449927
Target:  5'- aGCGCGUaCGCcgccgCCCGcgcccacaggggcGCGGGCGGgccgCCg -3'
miRNA:   3'- -CGCGCA-GCGa----GGGC-------------UGCCCGUCaa--GG- -5'
31022 3' -59 NC_006560.1 + 69002 0.73 0.450811
Target:  5'- cGCGCGUcCGCa-CCGACGcGGCGGUgUUCg -3'
miRNA:   3'- -CGCGCA-GCGagGGCUGC-CCGUCA-AGG- -5'
31022 3' -59 NC_006560.1 + 66783 0.72 0.459703
Target:  5'- cGCGCGgucCGCgUCCGGCuGGCAGaggUCCg -3'
miRNA:   3'- -CGCGCa--GCGaGGGCUGcCCGUCa--AGG- -5'
31022 3' -59 NC_006560.1 + 51532 0.72 0.459703
Target:  5'- cGCGCG-CGCUCCUGGCcGGCGcccucGUgcUCCa -3'
miRNA:   3'- -CGCGCaGCGAGGGCUGcCCGU-----CA--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.