Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31022 | 5' | -52.1 | NC_006560.1 | + | 141932 | 0.66 | 0.970359 |
Target: 5'- -cGGGCGUCAGGCGaaGGaacaccgAGCUGCa -3' miRNA: 3'- cuCCUGCAGUUUGUagUCg------UCGACGa -5' |
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31022 | 5' | -52.1 | NC_006560.1 | + | 140217 | 0.66 | 0.970359 |
Target: 5'- aGGGGGCGcCAcGCGUCgccgaccagaaAGCGGCgGCg -3' miRNA: 3'- -CUCCUGCaGUuUGUAG-----------UCGUCGaCGa -5' |
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31022 | 5' | -52.1 | NC_006560.1 | + | 135189 | 0.66 | 0.978488 |
Target: 5'- cAGGGCGcCGAAgA-CGGCGGcCUGCa -3' miRNA: 3'- cUCCUGCaGUUUgUaGUCGUC-GACGa -5' |
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31022 | 5' | -52.1 | NC_006560.1 | + | 133477 | 0.69 | 0.914663 |
Target: 5'- cGGGGCGUCcGGCGUCuacgggcgagcgcgAGCGGCcGCg -3' miRNA: 3'- cUCCUGCAGuUUGUAG--------------UCGUCGaCGa -5' |
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31022 | 5' | -52.1 | NC_006560.1 | + | 131658 | 0.66 | 0.96689 |
Target: 5'- gGAGGGCGUCGccggcgaggcccuGGCGggcgGGgGGCUGCUc -3' miRNA: 3'- -CUCCUGCAGU-------------UUGUag--UCgUCGACGA- -5' |
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31022 | 5' | -52.1 | NC_006560.1 | + | 130249 | 0.7 | 0.883159 |
Target: 5'- cGAGGugG-CGguGGCGUCgAGCgAGCUGCa -3' miRNA: 3'- -CUCCugCaGU--UUGUAG-UCG-UCGACGa -5' |
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31022 | 5' | -52.1 | NC_006560.1 | + | 129789 | 0.7 | 0.882429 |
Target: 5'- -uGGACGcgCAccgcaucGACcgCAGCGGCUGCc -3' miRNA: 3'- cuCCUGCa-GU-------UUGuaGUCGUCGACGa -5' |
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31022 | 5' | -52.1 | NC_006560.1 | + | 127161 | 0.67 | 0.952297 |
Target: 5'- --cGGCGUCGAGC-UCGGCGGCguccUGCc -3' miRNA: 3'- cucCUGCAGUUUGuAGUCGUCG----ACGa -5' |
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31022 | 5' | -52.1 | NC_006560.1 | + | 125241 | 0.66 | 0.98079 |
Target: 5'- uAGcGGCGUC--GCGUCGGaCGuGCUGCUg -3' miRNA: 3'- cUC-CUGCAGuuUGUAGUC-GU-CGACGA- -5' |
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31022 | 5' | -52.1 | NC_006560.1 | + | 124254 | 0.66 | 0.978247 |
Target: 5'- -cGGACGUCGAGCcguggugGUCcGCGGUcGCg -3' miRNA: 3'- cuCCUGCAGUUUG-------UAGuCGUCGaCGa -5' |
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31022 | 5' | -52.1 | NC_006560.1 | + | 120507 | 0.66 | 0.97328 |
Target: 5'- cGAGGugGUC--GCGg-GGCAGCgggGCg -3' miRNA: 3'- -CUCCugCAGuuUGUagUCGUCGa--CGa -5' |
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31022 | 5' | -52.1 | NC_006560.1 | + | 120405 | 0.74 | 0.656605 |
Target: 5'- cGAGGGCGac-GGCAgccucCGGCAGCUGCUg -3' miRNA: 3'- -CUCCUGCaguUUGUa----GUCGUCGACGA- -5' |
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31022 | 5' | -52.1 | NC_006560.1 | + | 111246 | 0.7 | 0.867323 |
Target: 5'- uGGGGGCGuUCGAGCG-CGGCAcggccgaucagauGCUGCa -3' miRNA: 3'- -CUCCUGC-AGUUUGUaGUCGU-------------CGACGa -5' |
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31022 | 5' | -52.1 | NC_006560.1 | + | 108092 | 1.07 | 0.007188 |
Target: 5'- gGAGGACGUCAAACAUCAGCAGCUGCUc -3' miRNA: 3'- -CUCCUGCAGUUUGUAGUCGUCGACGA- -5' |
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31022 | 5' | -52.1 | NC_006560.1 | + | 99873 | 0.66 | 0.978488 |
Target: 5'- gGGGGGCG-CGGGgGUCguGGCGGCgGCg -3' miRNA: 3'- -CUCCUGCaGUUUgUAG--UCGUCGaCGa -5' |
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31022 | 5' | -52.1 | NC_006560.1 | + | 99306 | 0.66 | 0.975987 |
Target: 5'- gGAGGugGUgGGGCG-CGGgGGCgUGCg -3' miRNA: 3'- -CUCCugCAgUUUGUaGUCgUCG-ACGa -5' |
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31022 | 5' | -52.1 | NC_006560.1 | + | 95111 | 0.68 | 0.933387 |
Target: 5'- --cGACGUCcgcGAGCGcCGGCGGCUGUa -3' miRNA: 3'- cucCUGCAG---UUUGUaGUCGUCGACGa -5' |
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31022 | 5' | -52.1 | NC_006560.1 | + | 93024 | 0.66 | 0.970055 |
Target: 5'- cGAGGACGaCGAcgcgcccACGuUCGGCGGCUucGCg -3' miRNA: 3'- -CUCCUGCaGUU-------UGU-AGUCGUCGA--CGa -5' |
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31022 | 5' | -52.1 | NC_006560.1 | + | 84651 | 0.71 | 0.842953 |
Target: 5'- cGGGGAUGgggUAcuaccucGGCAUCGGgGGCUGCUg -3' miRNA: 3'- -CUCCUGCa--GU-------UUGUAGUCgUCGACGA- -5' |
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31022 | 5' | -52.1 | NC_006560.1 | + | 82760 | 0.72 | 0.789765 |
Target: 5'- cGAGGACGUCGAG-GUCGGgGGCccgGCg -3' miRNA: 3'- -CUCCUGCAGUUUgUAGUCgUCGa--CGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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