miRNA display CGI


Results 41 - 60 of 225 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31023 3' -62 NC_006560.1 + 34485 0.66 0.654167
Target:  5'- uGUGCGGGgagccggggGUCGCGgCUccggagGCCGGCa -3'
miRNA:   3'- gCACGCCCag-------CAGCGCgGG------UGGUCGg -5'
31023 3' -62 NC_006560.1 + 96356 0.66 0.654167
Target:  5'- cCGUGCccg-CG-CGCGCCCGaCGGCCa -3'
miRNA:   3'- -GCACGcccaGCaGCGCGGGUgGUCGG- -5'
31023 3' -62 NC_006560.1 + 145735 0.66 0.654167
Target:  5'- uGUGaCGcGUCuugucUCGCGCCCccgcCCGGCCg -3'
miRNA:   3'- gCAC-GCcCAGc----AGCGCGGGu---GGUCGG- -5'
31023 3' -62 NC_006560.1 + 41290 0.66 0.654167
Target:  5'- aCGUcCGGG-CgGUCGCGCggcugCC-CCGGCCg -3'
miRNA:   3'- -GCAcGCCCaG-CAGCGCG-----GGuGGUCGG- -5'
31023 3' -62 NC_006560.1 + 52335 0.66 0.654167
Target:  5'- uCG-GCGcGGcCGUgGgCGCCCugCGGCa -3'
miRNA:   3'- -GCaCGC-CCaGCAgC-GCGGGugGUCGg -5'
31023 3' -62 NC_006560.1 + 57142 0.66 0.654167
Target:  5'- --cGCGGGgCGUCgGCGCCgACCcacGCg -3'
miRNA:   3'- gcaCGCCCaGCAG-CGCGGgUGGu--CGg -5'
31023 3' -62 NC_006560.1 + 79218 0.66 0.654167
Target:  5'- cCG-GCGGuGagaUC-UCGCGCCCGCCGaCCg -3'
miRNA:   3'- -GCaCGCC-C---AGcAGCGCGGGUGGUcGG- -5'
31023 3' -62 NC_006560.1 + 111984 0.66 0.654167
Target:  5'- --cGCGGGggaccUGgucccCGCGCCgGgCCAGCCg -3'
miRNA:   3'- gcaCGCCCa----GCa----GCGCGGgU-GGUCGG- -5'
31023 3' -62 NC_006560.1 + 131483 0.66 0.654167
Target:  5'- uCGcGCGGGuccucgacggcgUCGUCGCGgCCGuCgGGCUg -3'
miRNA:   3'- -GCaCGCCC------------AGCAGCGCgGGU-GgUCGG- -5'
31023 3' -62 NC_006560.1 + 132121 0.66 0.654167
Target:  5'- aCG-GCGGGUCGgucgcCGUGCCgAUCGaCCu -3'
miRNA:   3'- -GCaCGCCCAGCa----GCGCGGgUGGUcGG- -5'
31023 3' -62 NC_006560.1 + 39332 0.66 0.644446
Target:  5'- --gGCGGGgccgcccgcccUCGcgccUGCGCCC-CCGGCCc -3'
miRNA:   3'- gcaCGCCC-----------AGCa---GCGCGGGuGGUCGG- -5'
31023 3' -62 NC_006560.1 + 103511 0.66 0.644446
Target:  5'- aGU-CGGGaCGcCGCGCCC-CCAGguCCa -3'
miRNA:   3'- gCAcGCCCaGCaGCGCGGGuGGUC--GG- -5'
31023 3' -62 NC_006560.1 + 43947 0.66 0.644446
Target:  5'- -aUG-GGG-CGcaCGCGCCCGCgGGCCc -3'
miRNA:   3'- gcACgCCCaGCa-GCGCGGGUGgUCGG- -5'
31023 3' -62 NC_006560.1 + 88557 0.66 0.644446
Target:  5'- aCGcGCGGGg---CGCGCCUgaGgCGGCCg -3'
miRNA:   3'- -GCaCGCCCagcaGCGCGGG--UgGUCGG- -5'
31023 3' -62 NC_006560.1 + 17851 0.66 0.644446
Target:  5'- uCG-GCcGGccaucaggccccUgGUCGCGCgCGCCAGCCa -3'
miRNA:   3'- -GCaCGcCC------------AgCAGCGCGgGUGGUCGG- -5'
31023 3' -62 NC_006560.1 + 99985 0.66 0.644446
Target:  5'- uCGggGCcuGGGUcCGUCGCGCCCGggaAGCg -3'
miRNA:   3'- -GCa-CG--CCCA-GCAGCGCGGGUgg-UCGg -5'
31023 3' -62 NC_006560.1 + 123210 0.67 0.634716
Target:  5'- gCG-GCGGGcCGUCcuCGCCgACuuCAGCCu -3'
miRNA:   3'- -GCaCGCCCaGCAGc-GCGGgUG--GUCGG- -5'
31023 3' -62 NC_006560.1 + 114876 0.67 0.634716
Target:  5'- gCGcGgGGGUCGcCGCuCCCGCauaaaaGGCCc -3'
miRNA:   3'- -GCaCgCCCAGCaGCGcGGGUGg-----UCGG- -5'
31023 3' -62 NC_006560.1 + 71305 0.67 0.634716
Target:  5'- gCGUcCGuGGUCcgcgucguGUCGCGCCCGCUcGCg -3'
miRNA:   3'- -GCAcGC-CCAG--------CAGCGCGGGUGGuCGg -5'
31023 3' -62 NC_006560.1 + 58911 0.67 0.634716
Target:  5'- --cGCGGaGcucCGUCGCGCCCGac-GCCg -3'
miRNA:   3'- gcaCGCC-Ca--GCAGCGCGGGUgguCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.