miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31023 3' -62 NC_006560.1 + 11693 0.67 0.595844
Target:  5'- gCGgGCGGGaucggCGUCGCggggacgaacacGUCgGCCGGCCc -3'
miRNA:   3'- -GCaCGCCCa----GCAGCG------------CGGgUGGUCGG- -5'
31023 3' -62 NC_006560.1 + 11759 0.72 0.343375
Target:  5'- gCGUcCGGGUCGcaucgCGCGUCgACCGGCg -3'
miRNA:   3'- -GCAcGCCCAGCa----GCGCGGgUGGUCGg -5'
31023 3' -62 NC_006560.1 + 13357 0.68 0.566919
Target:  5'- aCG-GUGaGGUUGUagcgCGCGCCCgGCCgGGCCg -3'
miRNA:   3'- -GCaCGC-CCAGCA----GCGCGGG-UGG-UCGG- -5'
31023 3' -62 NC_006560.1 + 14205 0.66 0.662903
Target:  5'- gCGUG-GGGUgGUCgggcgggGCGCCCG-CGGUCg -3'
miRNA:   3'- -GCACgCCCAgCAG-------CGCGGGUgGUCGG- -5'
31023 3' -62 NC_006560.1 + 15031 0.67 0.624984
Target:  5'- gGUGCGGcGUCGgagacUCGCGCCgGggGGCg -3'
miRNA:   3'- gCACGCC-CAGC-----AGCGCGGgUggUCGg -5'
31023 3' -62 NC_006560.1 + 15186 0.74 0.257868
Target:  5'- ---aCGGG-CGUCGCGCCCuCCGGCg -3'
miRNA:   3'- gcacGCCCaGCAGCGCGGGuGGUCGg -5'
31023 3' -62 NC_006560.1 + 15205 0.69 0.519605
Target:  5'- nCGggGCGGGacUCGUuccCGC-CCCGCCGGUCc -3'
miRNA:   3'- -GCa-CGCCC--AGCA---GCGcGGGUGGUCGG- -5'
31023 3' -62 NC_006560.1 + 16304 0.7 0.430345
Target:  5'- gCG-GCGGGgcgCGggccCGCGCCCGCgAGgCg -3'
miRNA:   3'- -GCaCGCCCa--GCa---GCGCGGGUGgUCgG- -5'
31023 3' -62 NC_006560.1 + 16393 0.66 0.67742
Target:  5'- gCGgGCGGG-CGUCgccuggagccgcgguGcCGCCCGCCcgcGCCg -3'
miRNA:   3'- -GCaCGCCCaGCAG---------------C-GCGGGUGGu--CGG- -5'
31023 3' -62 NC_006560.1 + 17772 0.71 0.405354
Target:  5'- --aGCGGGUaGUCGuCGUCCGCUcgacGGCCu -3'
miRNA:   3'- gcaCGCCCAgCAGC-GCGGGUGG----UCGG- -5'
31023 3' -62 NC_006560.1 + 17851 0.66 0.644446
Target:  5'- uCG-GCcGGccaucaggccccUgGUCGCGCgCGCCAGCCa -3'
miRNA:   3'- -GCaCGcCC------------AgCAGCGCGgGUGGUCGG- -5'
31023 3' -62 NC_006560.1 + 18799 0.72 0.350738
Target:  5'- --cGCGGGacgccgucgCGUCGCGCCCACgCGGgUg -3'
miRNA:   3'- gcaCGCCCa--------GCAGCGCGGGUG-GUCgG- -5'
31023 3' -62 NC_006560.1 + 18869 0.68 0.566919
Target:  5'- --gGCGGGgcCGcCGC-CCCGCCcGCCg -3'
miRNA:   3'- gcaCGCCCa-GCaGCGcGGGUGGuCGG- -5'
31023 3' -62 NC_006560.1 + 20960 0.68 0.538366
Target:  5'- gCG-GCGGGcCGgcCGCgGCgCCGCCGGCUu -3'
miRNA:   3'- -GCaCGCCCaGCa-GCG-CG-GGUGGUCGG- -5'
31023 3' -62 NC_006560.1 + 21007 0.69 0.501107
Target:  5'- --gGCGGGgCGgCGgGCCCGCCccgaagggcgGGCCg -3'
miRNA:   3'- gcaCGCCCaGCaGCgCGGGUGG----------UCGG- -5'
31023 3' -62 NC_006560.1 + 21723 0.66 0.683207
Target:  5'- cCGggGCGGaGcCGgccgggCGcCGCCCgucGCCGGCCg -3'
miRNA:   3'- -GCa-CGCC-CaGCa-----GC-GCGGG---UGGUCGG- -5'
31023 3' -62 NC_006560.1 + 22191 0.68 0.557353
Target:  5'- cCGU-CGGGgccgcCGUCGCcgcgGCCCGCCcccgcGGCCc -3'
miRNA:   3'- -GCAcGCCCa----GCAGCG----CGGGUGG-----UCGG- -5'
31023 3' -62 NC_006560.1 + 22256 0.74 0.252067
Target:  5'- gGUGUGGGUCaUCGaCGCCgCGCCcccGCCg -3'
miRNA:   3'- gCACGCCCAGcAGC-GCGG-GUGGu--CGG- -5'
31023 3' -62 NC_006560.1 + 23395 0.69 0.482904
Target:  5'- --cGCGGGcgUCGUCGCcgcgcagcgccGCCUGgCGGCCg -3'
miRNA:   3'- gcaCGCCC--AGCAGCG-----------CGGGUgGUCGG- -5'
31023 3' -62 NC_006560.1 + 23618 0.68 0.547833
Target:  5'- cCGcGCGGcGcCGcCGCGCCCgcGCCGcGCCc -3'
miRNA:   3'- -GCaCGCC-CaGCaGCGCGGG--UGGU-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.