miRNA display CGI


Results 1 - 20 of 225 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31023 3' -62 NC_006560.1 + 685 0.69 0.509396
Target:  5'- --cGCGGGcUCGUCGCGggccccgucccccCCCG-CGGCCc -3'
miRNA:   3'- gcaCGCCC-AGCAGCGC-------------GGGUgGUCGG- -5'
31023 3' -62 NC_006560.1 + 1218 0.69 0.519605
Target:  5'- cCGgggGCGGGgccccUGcCGCGCCCccACgCAGCCc -3'
miRNA:   3'- -GCa--CGCCCa----GCaGCGCGGG--UG-GUCGG- -5'
31023 3' -62 NC_006560.1 + 1356 0.7 0.456218
Target:  5'- gCGcGCGGGUCcccCGCgGCCCGCaCGGCg -3'
miRNA:   3'- -GCaCGCCCAGca-GCG-CGGGUG-GUCGg -5'
31023 3' -62 NC_006560.1 + 1517 0.7 0.413583
Target:  5'- gCGUGCaucgggccccGGG-CG-CGCGCCCGgCCAcGCCg -3'
miRNA:   3'- -GCACG----------CCCaGCaGCGCGGGU-GGU-CGG- -5'
31023 3' -62 NC_006560.1 + 1938 0.7 0.421914
Target:  5'- cCGUcCGGGUCccaguccgggGUCGCGCCCcCCAGg- -3'
miRNA:   3'- -GCAcGCCCAG----------CAGCGCGGGuGGUCgg -5'
31023 3' -62 NC_006560.1 + 2293 0.68 0.547833
Target:  5'- gCG-GCGGaaGUCGggCGCGCCgGCggCGGCCg -3'
miRNA:   3'- -GCaCGCC--CAGCa-GCGCGGgUG--GUCGG- -5'
31023 3' -62 NC_006560.1 + 3242 0.72 0.328985
Target:  5'- gCGUGUGGG-CGggcccgggcggCGCGCggCGCCAGCCg -3'
miRNA:   3'- -GCACGCCCaGCa----------GCGCGg-GUGGUCGG- -5'
31023 3' -62 NC_006560.1 + 3281 0.75 0.224662
Target:  5'- --cGCGGGg-GUCGgGCCCGCCGGgCg -3'
miRNA:   3'- gcaCGCCCagCAGCgCGGGUGGUCgG- -5'
31023 3' -62 NC_006560.1 + 3776 0.74 0.246374
Target:  5'- gCG-GCGGGaccgCGgcgcgCGCGgCCGCCAGCCc -3'
miRNA:   3'- -GCaCGCCCa---GCa----GCGCgGGUGGUCGG- -5'
31023 3' -62 NC_006560.1 + 4225 0.67 0.615257
Target:  5'- gGUGCGGcaCGgCGCGCgCgACCGuGCCg -3'
miRNA:   3'- gCACGCCcaGCaGCGCG-GgUGGU-CGG- -5'
31023 3' -62 NC_006560.1 + 4672 0.66 0.673555
Target:  5'- --aGCGGcccguggCGUCGCGCCCgGCCAcgGCg -3'
miRNA:   3'- gcaCGCCca-----GCAGCGCGGG-UGGU--CGg -5'
31023 3' -62 NC_006560.1 + 4712 0.66 0.69282
Target:  5'- gCG-GCGGcGcUCGcUGCGCCCGgCGGCg -3'
miRNA:   3'- -GCaCGCC-C-AGCaGCGCGGGUgGUCGg -5'
31023 3' -62 NC_006560.1 + 4893 0.68 0.538366
Target:  5'- cCG-GCGGGggccgCGUCGCGCUCGggguCCGGguCCg -3'
miRNA:   3'- -GCaCGCCCa----GCAGCGCGGGU----GGUC--GG- -5'
31023 3' -62 NC_006560.1 + 5291 0.66 0.687057
Target:  5'- gCGU-CGGcGUCGUCGuCGgCCGCCgcgugcgacggcggcGGCCc -3'
miRNA:   3'- -GCAcGCC-CAGCAGC-GCgGGUGG---------------UCGG- -5'
31023 3' -62 NC_006560.1 + 5352 0.69 0.518673
Target:  5'- uCG-GCGGGcCGUCGUccggguccggcgaGCCCGCgCcGCCg -3'
miRNA:   3'- -GCaCGCCCaGCAGCG-------------CGGGUG-GuCGG- -5'
31023 3' -62 NC_006560.1 + 7243 0.66 0.69282
Target:  5'- --cGCGGGuaUCGgccCGaCGCCCGCguGCg -3'
miRNA:   3'- gcaCGCCC--AGCa--GC-GCGGGUGguCGg -5'
31023 3' -62 NC_006560.1 + 7519 0.75 0.219494
Target:  5'- --cGgGGGuucacgacUCGUCGCGCCCACUGGCg -3'
miRNA:   3'- gcaCgCCC--------AGCAGCGCGGGUGGUCGg -5'
31023 3' -62 NC_006560.1 + 7646 0.69 0.501107
Target:  5'- cCGU-CGGGgcgacCGUCGC-CCCucuggGCCGGCCg -3'
miRNA:   3'- -GCAcGCCCa----GCAGCGcGGG-----UGGUCGG- -5'
31023 3' -62 NC_006560.1 + 9383 0.68 0.565961
Target:  5'- uCGU-CGGaGUCGUCGUccucggaGUCCucCCAGCCg -3'
miRNA:   3'- -GCAcGCC-CAGCAGCG-------CGGGu-GGUCGG- -5'
31023 3' -62 NC_006560.1 + 10250 0.71 0.365797
Target:  5'- --cGCGGGUCG-CgGCGgCC-CCGGCCu -3'
miRNA:   3'- gcaCGCCCAGCaG-CGCgGGuGGUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.