miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31023 3' -62 NC_006560.1 + 107798 1.1 0.000861
Target:  5'- uCGUGCGGGUCGUCGCGCCCACCAGCCc -3'
miRNA:   3'- -GCACGCCCAGCAGCGCGGGUGGUCGG- -5'
31023 3' -62 NC_006560.1 + 139065 0.79 0.123075
Target:  5'- cCGUGcCGGGccCGggggCGCGCCCuGCCGGCCg -3'
miRNA:   3'- -GCAC-GCCCa-GCa---GCGCGGG-UGGUCGG- -5'
31023 3' -62 NC_006560.1 + 88440 0.78 0.135837
Target:  5'- aCG-GCGGGg-GUCGCGCCCGCgGGCg -3'
miRNA:   3'- -GCaCGCCCagCAGCGCGGGUGgUCGg -5'
31023 3' -62 NC_006560.1 + 127186 0.77 0.173213
Target:  5'- cCGgcgGCGGuagcgcgccGUCGUCGCGCCCACgacggcguacgCGGCCg -3'
miRNA:   3'- -GCa--CGCC---------CAGCAGCGCGGGUG-----------GUCGG- -5'
31023 3' -62 NC_006560.1 + 43488 0.77 0.177418
Target:  5'- -cUGCaGGUCGUaggucgccccCGCGCCCcCCAGCCg -3'
miRNA:   3'- gcACGcCCAGCA----------GCGCGGGuGGUCGG- -5'
31023 3' -62 NC_006560.1 + 118217 0.76 0.204596
Target:  5'- cCGUGCGGGaCGU-G-GCCCGCCGGCa -3'
miRNA:   3'- -GCACGCCCaGCAgCgCGGGUGGUCGg -5'
31023 3' -62 NC_006560.1 + 28209 0.76 0.204596
Target:  5'- cCGgGCGGGgagCGUCG-GCCCgggccGCCGGCCg -3'
miRNA:   3'- -GCaCGCCCa--GCAGCgCGGG-----UGGUCGG- -5'
31023 3' -62 NC_006560.1 + 68813 0.75 0.214427
Target:  5'- --cGCGGGaUCGUgGCGCCC-CCGcGCCu -3'
miRNA:   3'- gcaCGCCC-AGCAgCGCGGGuGGU-CGG- -5'
31023 3' -62 NC_006560.1 + 57888 0.75 0.214427
Target:  5'- --cGCGGGUCuucCGCGUCCACC-GCCg -3'
miRNA:   3'- gcaCGCCCAGca-GCGCGGGUGGuCGG- -5'
31023 3' -62 NC_006560.1 + 97352 0.75 0.214427
Target:  5'- aCGUGCGGGagcUCGUccgcgagcagaCGCGgCgGCCGGCCg -3'
miRNA:   3'- -GCACGCCC---AGCA-----------GCGCgGgUGGUCGG- -5'
31023 3' -62 NC_006560.1 + 7519 0.75 0.219494
Target:  5'- --cGgGGGuucacgacUCGUCGCGCCCACUGGCg -3'
miRNA:   3'- gcaCgCCC--------AGCAGCGCGGGUGGUCGg -5'
31023 3' -62 NC_006560.1 + 3281 0.75 0.224662
Target:  5'- --cGCGGGg-GUCGgGCCCGCCGGgCg -3'
miRNA:   3'- gcaCGCCCagCAGCgCGGGUGGUCgG- -5'
31023 3' -62 NC_006560.1 + 65915 0.75 0.235308
Target:  5'- aCGUGCGGGcCGUgGgcCGCCCccgcagguCCGGCCg -3'
miRNA:   3'- -GCACGCCCaGCAgC--GCGGGu-------GGUCGG- -5'
31023 3' -62 NC_006560.1 + 92326 0.75 0.235308
Target:  5'- gGU-CGGGUCc-CGCcgGCCCACCAGCCu -3'
miRNA:   3'- gCAcGCCCAGcaGCG--CGGGUGGUCGG- -5'
31023 3' -62 NC_006560.1 + 112379 0.75 0.240788
Target:  5'- uCGUGgGGGUCGcCGaCGUCgACCuGCCg -3'
miRNA:   3'- -GCACgCCCAGCaGC-GCGGgUGGuCGG- -5'
31023 3' -62 NC_006560.1 + 42146 0.75 0.24301
Target:  5'- gCGUcCGGGUCGccgucgucguccccCGCGCCCACCcccgGGCCg -3'
miRNA:   3'- -GCAcGCCCAGCa-------------GCGCGGGUGG----UCGG- -5'
31023 3' -62 NC_006560.1 + 111702 0.74 0.246374
Target:  5'- cCGUGCGGagccucgacGaCGUCGCGCgCCACCuGCUg -3'
miRNA:   3'- -GCACGCC---------CaGCAGCGCG-GGUGGuCGG- -5'
31023 3' -62 NC_006560.1 + 3776 0.74 0.246374
Target:  5'- gCG-GCGGGaccgCGgcgcgCGCGgCCGCCAGCCc -3'
miRNA:   3'- -GCaCGCCCa---GCa----GCGCgGGUGGUCGG- -5'
31023 3' -62 NC_006560.1 + 22256 0.74 0.252067
Target:  5'- gGUGUGGGUCaUCGaCGCCgCGCCcccGCCg -3'
miRNA:   3'- gCACGCCCAGcAGC-GCGG-GUGGu--CGG- -5'
31023 3' -62 NC_006560.1 + 55506 0.74 0.252067
Target:  5'- --cGCGGG--GUCgGCGCCCAgCAGCCa -3'
miRNA:   3'- gcaCGCCCagCAG-CGCGGGUgGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.