Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 31023 | 5' | -56.2 | NC_006560.1 | + | 28197 | 0.71 | 0.600418 |
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Target: 5'- cGGGCCGGCggcccGGGCGGggaGCGUCg-- -3' miRNA: 3'- uUCCGGCUG-----UCCGCCaagUGCAGaag -5' |
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| 31023 | 5' | -56.2 | NC_006560.1 | + | 9353 | 0.73 | 0.51936 |
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Target: 5'- gGAGGCCGguccgugcccgGCAGGCGG-UCGuCGUCggagUCg -3' miRNA: 3'- -UUCCGGC-----------UGUCCGCCaAGU-GCAGa---AG- -5' |
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| 31023 | 5' | -56.2 | NC_006560.1 | + | 5519 | 0.74 | 0.442964 |
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Target: 5'- gAGGGUCGGC-GGCGG-UCGCGcUCUUCc -3' miRNA: 3'- -UUCCGGCUGuCCGCCaAGUGC-AGAAG- -5' |
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| 31023 | 5' | -56.2 | NC_006560.1 | + | 3472 | 0.74 | 0.433858 |
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Target: 5'- cGGGCCGcGCGGGCGGcgUCGgCGUCggcgUCg -3' miRNA: 3'- uUCCGGC-UGUCCGCCa-AGU-GCAGa---AG- -5' |
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| 31023 | 5' | -56.2 | NC_006560.1 | + | 40106 | 0.76 | 0.365148 |
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Target: 5'- cGGGCCGcCGGGCGGagacUCGCGUCgUCc -3' miRNA: 3'- uUCCGGCuGUCCGCCa---AGUGCAGaAG- -5' |
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| 31023 | 5' | -56.2 | NC_006560.1 | + | 107832 | 1.06 | 0.003609 |
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Target: 5'- gAAGGCCGACAGGCGGUUCACGUCUUCc -3' miRNA: 3'- -UUCCGGCUGUCCGCCAAGUGCAGAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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