miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31023 5' -56.2 NC_006560.1 + 107832 1.06 0.003609
Target:  5'- gAAGGCCGACAGGCGGUUCACGUCUUCc -3'
miRNA:   3'- -UUCCGGCUGUCCGCCAAGUGCAGAAG- -5'
31023 5' -56.2 NC_006560.1 + 40106 0.76 0.365148
Target:  5'- cGGGCCGcCGGGCGGagacUCGCGUCgUCc -3'
miRNA:   3'- uUCCGGCuGUCCGCCa---AGUGCAGaAG- -5'
31023 5' -56.2 NC_006560.1 + 3472 0.74 0.433858
Target:  5'- cGGGCCGcGCGGGCGGcgUCGgCGUCggcgUCg -3'
miRNA:   3'- uUCCGGC-UGUCCGCCa-AGU-GCAGa---AG- -5'
31023 5' -56.2 NC_006560.1 + 5519 0.74 0.442964
Target:  5'- gAGGGUCGGC-GGCGG-UCGCGcUCUUCc -3'
miRNA:   3'- -UUCCGGCUGuCCGCCaAGUGC-AGAAG- -5'
31023 5' -56.2 NC_006560.1 + 9353 0.73 0.51936
Target:  5'- gGAGGCCGguccgugcccgGCAGGCGG-UCGuCGUCggagUCg -3'
miRNA:   3'- -UUCCGGC-----------UGUCCGCCaAGU-GCAGa---AG- -5'
31023 5' -56.2 NC_006560.1 + 28197 0.71 0.600418
Target:  5'- cGGGCCGGCggcccGGGCGGggaGCGUCg-- -3'
miRNA:   3'- uUCCGGCUG-----UCCGCCaagUGCAGaag -5'
31023 5' -56.2 NC_006560.1 + 53057 0.71 0.621058
Target:  5'- -uGGCCcuGCGGGCGGccgUCugcgACGUCUUCg -3'
miRNA:   3'- uuCCGGc-UGUCCGCCa--AG----UGCAGAAG- -5'
31023 5' -56.2 NC_006560.1 + 3323 0.71 0.621058
Target:  5'- cGGGCCGggggcGCGGGCGGgcgGCGUCggcgUCg -3'
miRNA:   3'- uUCCGGC-----UGUCCGCCaagUGCAGa---AG- -5'
31023 5' -56.2 NC_006560.1 + 3377 0.7 0.65103
Target:  5'- cGGGCgGGCGGGCGGg-CGCGggccggcUCUUCu -3'
miRNA:   3'- uUCCGgCUGUCCGCCaaGUGC-------AGAAG- -5'
31023 5' -56.2 NC_006560.1 + 30032 0.7 0.652062
Target:  5'- cGAGGCCGAgGaGGCGGUgCGCGcCggCa -3'
miRNA:   3'- -UUCCGGCUgU-CCGCCAaGUGCaGaaG- -5'
31023 5' -56.2 NC_006560.1 + 14020 0.7 0.672664
Target:  5'- gAGGGcCCGGCGGaCGGggUCGCGUCggggUCa -3'
miRNA:   3'- -UUCC-GGCUGUCcGCCa-AGUGCAGa---AG- -5'
31023 5' -56.2 NC_006560.1 + 58295 0.7 0.682919
Target:  5'- cGGGGCCuucuuGCGGGCGGg-CGCGUCggUCg -3'
miRNA:   3'- -UUCCGGc----UGUCCGCCaaGUGCAGa-AG- -5'
31023 5' -56.2 NC_006560.1 + 93996 0.7 0.682919
Target:  5'- gGGGGCCG--GGGCGGgggacgUCGCGgccuUCUUCg -3'
miRNA:   3'- -UUCCGGCugUCCGCCa-----AGUGC----AGAAG- -5'
31023 5' -56.2 NC_006560.1 + 51729 0.7 0.693132
Target:  5'- uGGGCCGACgcgcGGGCGGccUCGCGgcgCaUCg -3'
miRNA:   3'- uUCCGGCUG----UCCGCCa-AGUGCa--GaAG- -5'
31023 5' -56.2 NC_006560.1 + 4852 0.69 0.703292
Target:  5'- cGGcGCCGGCGGcGaGGUUCGCGUCg-- -3'
miRNA:   3'- uUC-CGGCUGUC-CgCCAAGUGCAGaag -5'
31023 5' -56.2 NC_006560.1 + 142076 0.69 0.703292
Target:  5'- cGAGGCCgGGCGGGCGGggcCGCGgcgCg-- -3'
miRNA:   3'- -UUCCGG-CUGUCCGCCaa-GUGCa--Gaag -5'
31023 5' -56.2 NC_006560.1 + 108518 0.69 0.713391
Target:  5'- -cGGCCGGC-GGCGGgcccgggggCGCGUCg-- -3'
miRNA:   3'- uuCCGGCUGuCCGCCaa-------GUGCAGaag -5'
31023 5' -56.2 NC_006560.1 + 26093 0.69 0.752986
Target:  5'- -cGGcCCGGCGcGGCGGgggcUUCGCGggggCUUCg -3'
miRNA:   3'- uuCC-GGCUGU-CCGCC----AAGUGCa---GAAG- -5'
31023 5' -56.2 NC_006560.1 + 59471 0.68 0.790843
Target:  5'- -cGGCCGaacGCGGGCGGgaggUCGCGg---- -3'
miRNA:   3'- uuCCGGC---UGUCCGCCa---AGUGCagaag -5'
31023 5' -56.2 NC_006560.1 + 76495 0.68 0.798154
Target:  5'- -cGGUCGACuGGCuGGagcacgcgcggCGCGUCUUCg -3'
miRNA:   3'- uuCCGGCUGuCCG-CCaa---------GUGCAGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.