miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31023 5' -56.2 NC_006560.1 + 1873 0.67 0.817738
Target:  5'- gGGGGUCG-CGGGCGGgggUCGCGggCggCg -3'
miRNA:   3'- -UUCCGGCuGUCCGCCa--AGUGCa-GaaG- -5'
31023 5' -56.2 NC_006560.1 + 3299 0.67 0.817738
Target:  5'- cGGGCgGGCGGGCGGUgaGCGcCg-- -3'
miRNA:   3'- uUCCGgCUGUCCGCCAagUGCaGaag -5'
31023 5' -56.2 NC_006560.1 + 3323 0.71 0.621058
Target:  5'- cGGGCCGggggcGCGGGCGGgcgGCGUCggcgUCg -3'
miRNA:   3'- uUCCGGC-----UGUCCGCCaagUGCAGa---AG- -5'
31023 5' -56.2 NC_006560.1 + 3377 0.7 0.65103
Target:  5'- cGGGCgGGCGGGCGGg-CGCGggccggcUCUUCu -3'
miRNA:   3'- uUCCGgCUGUCCGCCaaGUGC-------AGAAG- -5'
31023 5' -56.2 NC_006560.1 + 3472 0.74 0.433858
Target:  5'- cGGGCCGcGCGGGCGGcgUCGgCGUCggcgUCg -3'
miRNA:   3'- uUCCGGC-UGUCCGCCa-AGU-GCAGa---AG- -5'
31023 5' -56.2 NC_006560.1 + 4852 0.69 0.703292
Target:  5'- cGGcGCCGGCGGcGaGGUUCGCGUCg-- -3'
miRNA:   3'- uUC-CGGCUGUC-CgCCAAGUGCAGaag -5'
31023 5' -56.2 NC_006560.1 + 5519 0.74 0.442964
Target:  5'- gAGGGUCGGC-GGCGG-UCGCGcUCUUCc -3'
miRNA:   3'- -UUCCGGCUGuCCGCCaAGUGC-AGAAG- -5'
31023 5' -56.2 NC_006560.1 + 8359 0.66 0.874117
Target:  5'- -cGGCCGACGGacucgggcuGCGGgUC-CGUCUgUCg -3'
miRNA:   3'- uuCCGGCUGUC---------CGCCaAGuGCAGA-AG- -5'
31023 5' -56.2 NC_006560.1 + 8835 0.66 0.874117
Target:  5'- -cGGCCGGCcgcGGgGGUUcCAUGUCg-- -3'
miRNA:   3'- uuCCGGCUGu--CCgCCAA-GUGCAGaag -5'
31023 5' -56.2 NC_006560.1 + 9353 0.73 0.51936
Target:  5'- gGAGGCCGguccgugcccgGCAGGCGG-UCGuCGUCggagUCg -3'
miRNA:   3'- -UUCCGGC-----------UGUCCGCCaAGU-GCAGa---AG- -5'
31023 5' -56.2 NC_006560.1 + 11942 0.67 0.82637
Target:  5'- aGGGGCCGGCGGGCcaGGUccagggUCAgGUUggCu -3'
miRNA:   3'- -UUCCGGCUGUCCG--CCA------AGUgCAGaaG- -5'
31023 5' -56.2 NC_006560.1 + 12348 0.67 0.82637
Target:  5'- cGGGGCUGGCgGGGCGG---GCGUCUc- -3'
miRNA:   3'- -UUCCGGCUG-UCCGCCaagUGCAGAag -5'
31023 5' -56.2 NC_006560.1 + 14020 0.7 0.672664
Target:  5'- gAGGGcCCGGCGGaCGGggUCGCGUCggggUCa -3'
miRNA:   3'- -UUCC-GGCUGUCcGCCa-AGUGCAGa---AG- -5'
31023 5' -56.2 NC_006560.1 + 26093 0.69 0.752986
Target:  5'- -cGGcCCGGCGcGGCGGgggcUUCGCGggggCUUCg -3'
miRNA:   3'- uuCC-GGCUGU-CCGCC----AAGUGCa---GAAG- -5'
31023 5' -56.2 NC_006560.1 + 26244 0.67 0.851153
Target:  5'- gGAGGCCGGgcCGGaGgGGggCGCGUCg-- -3'
miRNA:   3'- -UUCCGGCU--GUC-CgCCaaGUGCAGaag -5'
31023 5' -56.2 NC_006560.1 + 27583 0.67 0.842268
Target:  5'- uGAGGCCGccggcgcGCGGGUGGgcgcUCGCGcCUg- -3'
miRNA:   3'- -UUCCGGC-------UGUCCGCCa---AGUGCaGAag -5'
31023 5' -56.2 NC_006560.1 + 28197 0.71 0.600418
Target:  5'- cGGGCCGGCggcccGGGCGGggaGCGUCg-- -3'
miRNA:   3'- uUCCGGCUG-----UCCGCCaagUGCAGaag -5'
31023 5' -56.2 NC_006560.1 + 30032 0.7 0.652062
Target:  5'- cGAGGCCGAgGaGGCGGUgCGCGcCggCa -3'
miRNA:   3'- -UUCCGGCUgU-CCGCCAaGUGCaGaaG- -5'
31023 5' -56.2 NC_006560.1 + 32654 0.66 0.874117
Target:  5'- gGAGGCCGcCcGGCGGcggCACGgggUCg -3'
miRNA:   3'- -UUCCGGCuGuCCGCCaa-GUGCagaAG- -5'
31023 5' -56.2 NC_006560.1 + 33783 0.66 0.888331
Target:  5'- cGGGGCCGugGGGCGcGcgaagUCGCGg---- -3'
miRNA:   3'- -UUCCGGCugUCCGC-Ca----AGUGCagaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.