miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31024 3' -56 NC_006560.1 + 107426 1.11 0.002212
Target:  5'- uGAUCCACCUCCUGGCGUUCGACACCCu -3'
miRNA:   3'- -CUAGGUGGAGGACCGCAAGCUGUGGG- -5'
31024 3' -56 NC_006560.1 + 90361 0.78 0.316376
Target:  5'- --gCCGCCcaCCUGGCGUUCGACGaaaaCCa -3'
miRNA:   3'- cuaGGUGGa-GGACCGCAAGCUGUg---GG- -5'
31024 3' -56 NC_006560.1 + 75696 0.78 0.331011
Target:  5'- cGUCCACCgCCUGgacugggggcccGCGUUCGGCGCCg -3'
miRNA:   3'- cUAGGUGGaGGAC------------CGCAAGCUGUGGg -5'
31024 3' -56 NC_006560.1 + 95338 0.78 0.331011
Target:  5'- ---gCGCCgcgCCgggGGUGUUCGACGCCCa -3'
miRNA:   3'- cuagGUGGa--GGa--CCGCAAGCUGUGGG- -5'
31024 3' -56 NC_006560.1 + 77493 0.77 0.361753
Target:  5'- uGAUCacgCACCUCCagcUGGCGcugagCGACGCCCa -3'
miRNA:   3'- -CUAG---GUGGAGG---ACCGCaa---GCUGUGGG- -5'
31024 3' -56 NC_006560.1 + 46293 0.77 0.361753
Target:  5'- -uUCUGgCUCCUGGCGcucugcgucgUCGACGCCCu -3'
miRNA:   3'- cuAGGUgGAGGACCGCa---------AGCUGUGGG- -5'
31024 3' -56 NC_006560.1 + 125630 0.76 0.411463
Target:  5'- uGAUCCGCCgcaacagccgCCUGGCcUUCGACgagacgcucGCCCg -3'
miRNA:   3'- -CUAGGUGGa---------GGACCGcAAGCUG---------UGGG- -5'
31024 3' -56 NC_006560.1 + 26279 0.74 0.493386
Target:  5'- cGcgCCGCCggggagCCUGGCGggCGGCuucuGCCCc -3'
miRNA:   3'- -CuaGGUGGa-----GGACCGCaaGCUG----UGGG- -5'
31024 3' -56 NC_006560.1 + 124327 0.73 0.536077
Target:  5'- cGAgcgCCACCUCCgcggguugcugcggGGCGUcCGGCgACCCc -3'
miRNA:   3'- -CUa--GGUGGAGGa-------------CCGCAaGCUG-UGGG- -5'
31024 3' -56 NC_006560.1 + 131290 0.73 0.551927
Target:  5'- -uUCCGCUUCCcGGgGcUCGAgGCCCg -3'
miRNA:   3'- cuAGGUGGAGGaCCgCaAGCUgUGGG- -5'
31024 3' -56 NC_006560.1 + 87961 0.73 0.561905
Target:  5'- --aCCGCgUCgUGGCG-UCGACGCCg -3'
miRNA:   3'- cuaGGUGgAGgACCGCaAGCUGUGGg -5'
31024 3' -56 NC_006560.1 + 50938 0.73 0.565911
Target:  5'- cGGUCCcCCUgCUGGCGacccggggacucgCGGCGCCCc -3'
miRNA:   3'- -CUAGGuGGAgGACCGCaa-----------GCUGUGGG- -5'
31024 3' -56 NC_006560.1 + 118817 0.73 0.582001
Target:  5'- cGcgCgGCCcgUCCUGGCGccgUUCGACGCCg -3'
miRNA:   3'- -CuaGgUGG--AGGACCGC---AAGCUGUGGg -5'
31024 3' -56 NC_006560.1 + 97837 0.72 0.602239
Target:  5'- aGAUCCGCCUCga-GCG--CGACGCCCu -3'
miRNA:   3'- -CUAGGUGGAGgacCGCaaGCUGUGGG- -5'
31024 3' -56 NC_006560.1 + 90673 0.72 0.612394
Target:  5'- cGcgCCGCCggCCUGGUGggcgccauggucUUCGGCACCa -3'
miRNA:   3'- -CuaGGUGGa-GGACCGC------------AAGCUGUGGg -5'
31024 3' -56 NC_006560.1 + 78403 0.72 0.612394
Target:  5'- --gCCACgCUCCUGGgGgccccggucgUCGugGCCCu -3'
miRNA:   3'- cuaGGUG-GAGGACCgCa---------AGCugUGGG- -5'
31024 3' -56 NC_006560.1 + 113442 0.72 0.622564
Target:  5'- --aCCACggcgCUCCUGuGCGccgCGGCGCCCg -3'
miRNA:   3'- cuaGGUG----GAGGAC-CGCaa-GCUGUGGG- -5'
31024 3' -56 NC_006560.1 + 112564 0.72 0.632741
Target:  5'- --gCCGCCgUCCgcggGGCGUUCGAggaccgcgggUACCCc -3'
miRNA:   3'- cuaGGUGG-AGGa---CCGCAAGCU----------GUGGG- -5'
31024 3' -56 NC_006560.1 + 42107 0.72 0.632741
Target:  5'- --gCCGCCUCCU--CG-UCGACGCCCc -3'
miRNA:   3'- cuaGGUGGAGGAccGCaAGCUGUGGG- -5'
31024 3' -56 NC_006560.1 + 85229 0.71 0.642918
Target:  5'- -uUCCGCCUCCgUGaCGc-CGGCGCCCg -3'
miRNA:   3'- cuAGGUGGAGG-ACcGCaaGCUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.