miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31024 3' -56 NC_006560.1 + 449 0.67 0.872108
Target:  5'- -cUCCgcgGCCUCCccGGCGggCGGCcagucACCCc -3'
miRNA:   3'- cuAGG---UGGAGGa-CCGCaaGCUG-----UGGG- -5'
31024 3' -56 NC_006560.1 + 3917 0.66 0.91759
Target:  5'- cGUCCcCCUCCUccgccGCGggggCGGCGCCg -3'
miRNA:   3'- cUAGGuGGAGGAc----CGCaa--GCUGUGGg -5'
31024 3' -56 NC_006560.1 + 4721 0.66 0.911781
Target:  5'- --cUCGCUgcgCCcGGCGg-CGACGCCCg -3'
miRNA:   3'- cuaGGUGGa--GGaCCGCaaGCUGUGGG- -5'
31024 3' -56 NC_006560.1 + 5620 0.66 0.908184
Target:  5'- --cCCGCCUCauauaccccggccGGCGacgggCGGCGCCCg -3'
miRNA:   3'- cuaGGUGGAGga-----------CCGCaa---GCUGUGGG- -5'
31024 3' -56 NC_006560.1 + 7908 0.7 0.752444
Target:  5'- --gCCAUCUggcCCUGGCGgaCGGCGgCCg -3'
miRNA:   3'- cuaGGUGGA---GGACCGCaaGCUGUgGG- -5'
31024 3' -56 NC_006560.1 + 8073 0.7 0.703511
Target:  5'- --gCCACCUCUUucGcGCGUUCGGCugCg -3'
miRNA:   3'- cuaGGUGGAGGA--C-CGCAAGCUGugGg -5'
31024 3' -56 NC_006560.1 + 10886 0.71 0.69351
Target:  5'- cGAUCCACCg---GGCGUUCggaacgcgaaGACGCCg -3'
miRNA:   3'- -CUAGGUGGaggaCCGCAAG----------CUGUGGg -5'
31024 3' -56 NC_006560.1 + 11837 0.7 0.739928
Target:  5'- --gCCGCCaggCCcaggggaaacaggcUGGCGUUCGuCGCCCc -3'
miRNA:   3'- cuaGGUGGa--GG--------------ACCGCAAGCuGUGGG- -5'
31024 3' -56 NC_006560.1 + 13558 0.66 0.91759
Target:  5'- gGGUCCGCCUUCUgcuccGGCGggggcagGGgGCCCc -3'
miRNA:   3'- -CUAGGUGGAGGA-----CCGCaag----CUgUGGG- -5'
31024 3' -56 NC_006560.1 + 16872 0.66 0.91759
Target:  5'- gGGUCCccggccaggACCUCgggGGCGUucgugUCGACcguGCCCg -3'
miRNA:   3'- -CUAGG---------UGGAGga-CCGCA-----AGCUG---UGGG- -5'
31024 3' -56 NC_006560.1 + 17399 0.69 0.771347
Target:  5'- cGggCCACCUCCgaggGGgGUUUG-CAgCCg -3'
miRNA:   3'- -CuaGGUGGAGGa---CCgCAAGCuGUgGG- -5'
31024 3' -56 NC_006560.1 + 18856 0.67 0.879277
Target:  5'- cGUCuCGCCUCUgGGCGgggcCGcCGCCCc -3'
miRNA:   3'- cUAG-GUGGAGGaCCGCaa--GCuGUGGG- -5'
31024 3' -56 NC_006560.1 + 22689 0.66 0.89296
Target:  5'- cGcgCCGCCguggCCgGGCG--CGACGCCa -3'
miRNA:   3'- -CuaGGUGGa---GGaCCGCaaGCUGUGGg -5'
31024 3' -56 NC_006560.1 + 26279 0.74 0.493386
Target:  5'- cGcgCCGCCggggagCCUGGCGggCGGCuucuGCCCc -3'
miRNA:   3'- -CuaGGUGGa-----GGACCGCaaGCUG----UGGG- -5'
31024 3' -56 NC_006560.1 + 27801 0.68 0.82483
Target:  5'- --gCCGCCguUCCUucGGCGcgCGGgGCCCu -3'
miRNA:   3'- cuaGGUGG--AGGA--CCGCaaGCUgUGGG- -5'
31024 3' -56 NC_006560.1 + 32166 0.7 0.742831
Target:  5'- cGUCC-CCggcgCCgagGGCGggUCGAgGCCCg -3'
miRNA:   3'- cUAGGuGGa---GGa--CCGCa-AGCUgUGGG- -5'
31024 3' -56 NC_006560.1 + 35272 0.67 0.88623
Target:  5'- --gCCGCCgcgCCgGGCGg-CGGgGCCCg -3'
miRNA:   3'- cuaGGUGGa--GGaCCGCaaGCUgUGGG- -5'
31024 3' -56 NC_006560.1 + 41569 0.7 0.723326
Target:  5'- --cCCGCCUCCcaaagugcucgaUGGCGUUguggGACGCCUu -3'
miRNA:   3'- cuaGGUGGAGG------------ACCGCAAg---CUGUGGG- -5'
31024 3' -56 NC_006560.1 + 42107 0.72 0.632741
Target:  5'- --gCCGCCUCCU--CG-UCGACGCCCc -3'
miRNA:   3'- cuaGGUGGAGGAccGCaAGCUGUGGG- -5'
31024 3' -56 NC_006560.1 + 44632 0.66 0.919848
Target:  5'- aGAUgCGCCgCCUGGCGgacacgugccuggCGACcAUCCu -3'
miRNA:   3'- -CUAgGUGGaGGACCGCaa-----------GCUG-UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.