miRNA display CGI


Results 1 - 20 of 376 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31024 5' -65.1 NC_006560.1 + 107460 1.11 0.000403
Target:  5'- cGCGACCGUCGGCCCGGGGGCGCUCGCc -3'
miRNA:   3'- -CGCUGGCAGCCGGGCCCCCGCGAGCG- -5'
31024 5' -65.1 NC_006560.1 + 34615 0.86 0.026066
Target:  5'- gGUGGCCGcgCGGCUCGGGGGCGCggaggUCGCa -3'
miRNA:   3'- -CGCUGGCa-GCCGGGCCCCCGCG-----AGCG- -5'
31024 5' -65.1 NC_006560.1 + 108516 0.86 0.026739
Target:  5'- gGCGGCCGgcggCgGGCCCGGGGGCGCgUCGg -3'
miRNA:   3'- -CGCUGGCa---G-CCGGGCCCCCGCG-AGCg -5'
31024 5' -65.1 NC_006560.1 + 86284 0.84 0.037199
Target:  5'- cGCGGCCuccgggaaGUCGGCCCGGaGGCGCUCGa -3'
miRNA:   3'- -CGCUGG--------CAGCCGGGCCcCCGCGAGCg -5'
31024 5' -65.1 NC_006560.1 + 26479 0.83 0.043294
Target:  5'- aGCGGCCGgCGGCCCcggcgGGGGGCGggCGCg -3'
miRNA:   3'- -CGCUGGCaGCCGGG-----CCCCCGCgaGCG- -5'
31024 5' -65.1 NC_006560.1 + 118335 0.83 0.045191
Target:  5'- gGCGGCCGgCGGCCCccgcgacgacgccgGGGcGGUGCUCGCg -3'
miRNA:   3'- -CGCUGGCaGCCGGG--------------CCC-CCGCGAGCG- -5'
31024 5' -65.1 NC_006560.1 + 135066 0.83 0.046697
Target:  5'- cGCGGCgaCGUCGGCgUCGGGGGCGC-CGCc -3'
miRNA:   3'- -CGCUG--GCAGCCG-GGCCCCCGCGaGCG- -5'
31024 5' -65.1 NC_006560.1 + 15242 0.82 0.049982
Target:  5'- cGCGGCCGgugCGGUcggggaggcggacgCCGGGGGCGCggUCGCg -3'
miRNA:   3'- -CGCUGGCa--GCCG--------------GGCCCCCGCG--AGCG- -5'
31024 5' -65.1 NC_006560.1 + 12800 0.8 0.069725
Target:  5'- aGgGAcCCGUCGG-CCGGGGGCcGCUCGUc -3'
miRNA:   3'- -CgCU-GGCAGCCgGGCCCCCG-CGAGCG- -5'
31024 5' -65.1 NC_006560.1 + 43414 0.8 0.073281
Target:  5'- aGCG-CCG-CGGCgCCGGGGGCGUcggCGCg -3'
miRNA:   3'- -CGCuGGCaGCCG-GGCCCCCGCGa--GCG- -5'
31024 5' -65.1 NC_006560.1 + 27270 0.8 0.075123
Target:  5'- cCGGCCG-CGGCCgCGGGGGCGgggCGCg -3'
miRNA:   3'- cGCUGGCaGCCGG-GCCCCCGCga-GCG- -5'
31024 5' -65.1 NC_006560.1 + 76472 0.79 0.08092
Target:  5'- gGCGGCCGagcUGGaCCCGGGGGCGgUCGa -3'
miRNA:   3'- -CGCUGGCa--GCC-GGGCCCCCGCgAGCg -5'
31024 5' -65.1 NC_006560.1 + 99901 0.79 0.082946
Target:  5'- gGCGGCgcgggguucaUGUCGGCCUcGGGGCGCUCGg -3'
miRNA:   3'- -CGCUG----------GCAGCCGGGcCCCCGCGAGCg -5'
31024 5' -65.1 NC_006560.1 + 3316 0.79 0.08502
Target:  5'- aGCG-CCG-CGGgCCGGGGGCGCggGCg -3'
miRNA:   3'- -CGCuGGCaGCCgGGCCCCCGCGagCG- -5'
31024 5' -65.1 NC_006560.1 + 117640 0.79 0.087143
Target:  5'- cGCGACCGgcgagugCGGCCCcuGGGucucGGCGUUCGCc -3'
miRNA:   3'- -CGCUGGCa------GCCGGG--CCC----CCGCGAGCG- -5'
31024 5' -65.1 NC_006560.1 + 34712 0.79 0.089317
Target:  5'- gGUGGCUcucUCGGgCCGGGGGuCGCUCGCc -3'
miRNA:   3'- -CGCUGGc--AGCCgGGCCCCC-GCGAGCG- -5'
31024 5' -65.1 NC_006560.1 + 70174 0.79 0.089317
Target:  5'- aCGcCCuggCGGCCCGGGGcGUGCUCGCc -3'
miRNA:   3'- cGCuGGca-GCCGGGCCCC-CGCGAGCG- -5'
31024 5' -65.1 NC_006560.1 + 66700 0.79 0.089317
Target:  5'- uCGACCcggCGGCCCGGGGGgGCgUGCu -3'
miRNA:   3'- cGCUGGca-GCCGGGCCCCCgCGaGCG- -5'
31024 5' -65.1 NC_006560.1 + 93600 0.78 0.093819
Target:  5'- gGCGGCCG--GGCCCGGaGGGCGUuuUCGUg -3'
miRNA:   3'- -CGCUGGCagCCGGGCC-CCCGCG--AGCG- -5'
31024 5' -65.1 NC_006560.1 + 39395 0.78 0.093819
Target:  5'- -gGGCCGaacUCgGGCUCGGGGGCGC-CGCg -3'
miRNA:   3'- cgCUGGC---AG-CCGGGCCCCCGCGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.